LOCUS       XM_039082238            5728 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rho GTPase-activating protein 20-like
            (LOC102555809), transcript variant X1, mRNA.
ACCESSION   XM_039082238
VERSION     XM_039082238.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082238.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5728
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5728
                     /gene="LOC102555809"
                     /note="rho GTPase-activating protein 20-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:102555809"
                     /db_xref="RGD:7677670"
     CDS             200..1489
                     /gene="LOC102555809"
                     /codon_start=1
                     /product="rho GTPase-activating protein 20-like isoform
                     X1"
                     /protein_id="XP_038938166.1"
                     /db_xref="GeneID:102555809"
                     /db_xref="RGD:7677670"
                     /translation="MCLRILTSQWFFSLTTTESSDFSSFLATTVTSLVSRGRKANRNF
                     TLFDKFFIPGSTKKVELCLYQENSLFFNIDMTEEDVGEEGRTVVCQGAAVIRKGWKRK
                     KRYLTLFNDVFVVSSKLNKKKFKIKHVIPLAYLWIGDEVDAFRSDNTAASKSIYLYWP
                     MGHVVATFRSMEQTIWWYFFLQRSIREAKKHNTMELPMRIFTEDIAGCDTPLYLTATN
                     YNTVNDIISKFLSMIRKQNTEDYQLWFCPGPGEAPRALQGHEYPHDIRMINIQKNFSS
                     RNLRNLTDFPSLPGVIMKYLNADKHGKFILKPRNSARSQQHKKKKTLKKQRTSITSRL
                     DRSSVPDQDQVCTITPVKKGGKLFGRELSSICQDGDLPSAILDMLYILKKKGPTTKSV
                     FIEPPSIILFQTVKDKLDSEEEVDINKQINLCSDLDL"
ORIGIN      
        1 tatctatcta tctatctatc tatctatcca tgtatctgtc ttctatatat catataggta
       61 tagctacaac tatatgtata tttatagttg tgaaactgtt attcattaca aacacttgtg
      121 gctctacctg tgtacaaaag atatgtttta aagccacagg cagagaaaat gaaatgcaca
      181 tgccactttg tctgatgaca tgtgccttag aatattgaca tcacaatggt tcttcagcct
      241 gacaactaca gaatcctcag acttcagtag ttttctagcc actacagtca ccagtttggt
      301 gtctagaggt aggaaggcaa acagaaattt cacattgttt gataagttct tcattccagg
      361 ctctactaaa aaggtggagc tctgtctgta tcaggagaac tctctctttt tcaacataga
      421 catgactgag gaggatgtag gagaagaagg tcgaacagtg gtttgccaag gcgctgcggt
      481 tatccgaaaa ggctggaaaa gaaagaaacg atatctgacc ctgttcaacg atgtatttgt
      541 tgtatccagt aaactgaata agaagaaatt taagataaaa catgtcattc cattggctta
      601 cctgtggatt ggtgatgaag tggacgcatt caggtcagac aacactgctg cttccaagtc
      661 catttaccta tactggccga tgggacatgt tgttgccacc tttcgttcca tggaacagac
      721 catttggtgg tacttctttc tacaaagatc cattcgtgaa gccaagaaac acaacacaat
      781 ggaacttccc atgcggatat tcactgagga cattgcaggc tgtgacactc ctctatattt
      841 aacagcaaca aactacaata cagtgaatga cataatcagc aagtttctat caatgataag
      901 aaaacaaaac actgaagatt accaactgtg gttctgtcct ggccctgggg aagctccaag
      961 agcactccaa gggcatgagt atccacatga cattagaatg ataaatattc aaaagaactt
     1021 cagttcacgg aacttaagaa atttaacaga tttcccttcc ctacctgggg taatcatgaa
     1081 atatctaaat gctgataaac atggaaaatt catcttaaag ccccgaaact cagcaagaag
     1141 ccagcagcat aaaaaaaaaa aaactttaaa gaaacaaaga acttctataa catctcggtt
     1201 ggacaggagc tctgtgcctg accaggacca agtatgcacc atcacaccag ttaaaaaggg
     1261 aggaaaactg tttggaagag aactcagttc catttgtcag gatggcgacc tgccttcagc
     1321 aattctggac atgctgtaca tactaaaaaa gaaagggccc acaaccaaga gtgtttttat
     1381 agaacctccg agtataattt tgttccaaac agtaaaggac aaattggatt cagaagaaga
     1441 ggtggatata aacaagcaaa tcaatttatg tagtgacctg gatctttaag gacttcctcc
     1501 aagacatcaa gggaagtcta atgacttcaa aactatatga tgagtggatt gctgtaacca
     1561 aaaaagtcaa tgatgaagat aaattagccg cagtgcagag gtaattgttg gcaaactctg
     1621 aacaacatca acaaaataga agtaacattt gcttacacac attagagatt atatatcaca
     1681 gaaacattta ctaagaacac tgacagacag caaaaggttt cagtcattga ccaacacgaa
     1741 agacactttc aaaagagtat gagttacagt gtgaattaca gtagccaagg tttatagtct
     1801 tactttcata ttccaattat atttgtcttt tttctgaatt gggtaaatat ttcaagcaat
     1861 aatttgagta caaattcttt cattttattt tcaaagcacc ctgcatatat gattactctg
     1921 ttcccttcct tcatatttac aaattgacta tacttgtttt aaaataactg tctctgtgtt
     1981 cagtctttta gataaaatgt cacctgaaaa tgcatctctt ctgaggcaac tttttcgtat
     2041 attgtatgaa attaaaagta attctcctgt taatgaaatg tcttcttacc acctatctgt
     2101 tgggttagcc ccatgtctct tattcatgcc cagctcctgc aataatggag tgacaaatga
     2161 tattggcaaa aaggtaatta gataagaact ttatgcctag cgtgataagc ctttacaatg
     2221 agataggaaa acaggattat cccgagaatc tggattattt tattattgtt gttgttgact
     2281 gttttggttt tggttttgtt tcattttgta tagtaaacac agttttgaaa ggtgttcttc
     2341 tggagggaag gaatcattgg tatgttttaa gtaaaatata aatgggtaat tgaggtcagt
     2401 gactcagtat tttgtctttg tcatttagaa tatccttaga ctaacccagt gagaacaaat
     2461 gctgtgttct ccctgcctcc cacagaatta tttgcaggga gctgttttac tggttcagtt
     2521 cagatctggg acagatctgg acggaggagt tcctcctata ttcctatttc cagaagtact
     2581 atgcagtttc ctcttgggcc atggatgtgg gcaaaggtgg gcagaagtgg cagtctttcc
     2641 tgtcatgcag tctcaggatt gcctgcactt ctgggtgttc agctctctct cccacaggat
     2701 tttggagcaa ggagatgtgg cctgcaagct tattttatac cctagataat taatagaaat
     2761 accctctttg tattttttca ggggcaattt acaatctcta gcaaagcaag gttttttgtt
     2821 tagttttgtt ttttaacttc atcaagcatt ctttccagga tatttacatt tggatcagcc
     2881 aataggatgt catccacata gtgatatata atggattatg gaaattgttt acaaatcatc
     2941 tctaatggct gttgtacaaa atactgaaac aggtagggct gttaaatatt ctctatggaa
     3001 gaactttcta atgatatctt tttattggga gacctctatt gaagagaggt actgagaaag
     3061 caaacctttc cttatcgtgt tcatgtagag aaatcatttt ttaaaaaaat cttttagatc
     3121 aatcactatg ataggccatt tcttaggcca gtgaaggcaa tgggattcca gactgctagc
     3181 aacccattgg ctgaaaaatc ttattaatca ctctgagatc tgtcagcatc ctcaatttgc
     3241 cttttttttt atgacaaata ccggaaaatt ccaaggactg atagagtcct ctatatgctg
     3301 agcctccagc tgctcttgga ctagctcttc taatgcctgt aggttttaat tggcatagat
     3361 cattgataaa tccaaatggg ttggtcagtc aaccacctta gtggtaaggc tgatggtatc
     3421 ttaacctcag tgtcttcttt gggtagagct aaattgtcag cctctgctct atctagttta
     3481 tggacaactt ggacactctg tagctgcctt tgataacatt ctctaactaa cttagcaacc
     3541 taactggttt catggccaga ctgaaactga ggggatatta ttttgtgttt tcttttgctg
     3601 caatagatct cttccacaaa agttaatggc tataccatcc acatatggct ccaagttttt
     3661 tacctgtcct tctgttctta tacctttaag ccatctggtg cttttctgta tttgtaaagt
     3721 cccaactctt gaaattggat gtctacttct tgaagattgc aacttgcagg ccaaggtttt
     3781 gaaaagataa tggtgacatc tgccccagtg tcaaccactc cttcaatctc aatattgttt
     3841 actagttttg ttagttttgg cctttgatct tctatagaag tttgaaaaaa attcattttt
     3901 gactcccttt taggtttttt gaattgtcta tagaacttgc ctcagtcttg tctggtctca
     3961 caacatctgt ttttgaaaca gtgacattta attgtcctga ggaagagaac tgtctctgcc
     4021 tggcattggg gcatgtgaga gggcccctag gagatttttg gtaaggcatt gccccatttg
     4081 tctgttgctg ttctacattc cctaatcaaa tgtctgcctt tcccacatct ttgataaatt
     4141 ccagaaggca taggaccctt tttggtatta ctttggtttt tcatgcagtt atgtctgaga
     4201 tgaccctgct cactacaatt aaaatattta aaatcttggg tcatctctag gtgtctagtg
     4261 gcatcttctc ctatcacagt catatcagtc taacaagacc caacatcagc tgtatatcta
     4321 tttcactcat ttattaatat tcaccttgac ttcagtggtc tgattacttc cttgcattca
     4381 gtatttgcat tttcaaaggt taaagacttg attattgtct ttcttgctgc tgaatctgat
     4441 acacttcttt ccagagttga ggatagcctt tgcaaaaggt caggaaaggt ttcttttgga
     4501 cctcacatga ctaaagtaaa tgattctttt ccctgattct gtgactttgt cccagggttt
     4561 taagactggc aatcaacata atgccacaga ttcttcatca tatacagcct cattcatata
     4621 cctcagcaga gcaaccttca ccaatttctt tacccctggc tctgttttgt catgatatct
     4681 ccccaacttc atttctccac ctggagaaca catgtaaata tgtagcaggt tctagtattg
     4741 ctcttgccgt atctttccag gcttgggaag ttactccatt agctcaagag tcacgatggg
     4801 ttttacgaat gacaaatgca ttccaaaatt agtgacactt tctttaaatt tcctcatttc
     4861 taataaattc atgggttgct attcaaattc ctgatagcac tgtggatgat tatcatctgg
     4921 aggtctttgt tgtatattaa ccggatagac taaaatttgt tttctaataa ccttaggttg
     4981 gcttctctaa tctcttctgt ctctacctga gtatgttcct caattgaaat tttaaattcc
     5041 tcccttaaga tatgtgtcca tgcttcatat ctctcttttt gacactcctc ctgttccttg
     5101 aattcctata ttctctgttc ttcattctgc ctcctcattt tgattttttc tttatattgc
     5161 aattctgata gtctactatt ttattttgat tgattaattt taaaatgtta ttctccaact
     5221 cttgcttcca atcctcatta ttttctcttt gttgctcagt ctgatcagtg agctcttcta
     5281 ttttgtgttc tagcatcgtc tccagctctt cgctcccacc tttatttcca tctttcacac
     5341 tgctctataa tttcctgtat cttctgttct aggcctcgct tctataatct taggttctct
     5401 ttattttgta aatctgattt tgcagcatct gcctgatttt gagttgctag cttaagtaaa
     5461 ttagcctcta gatttaactt attttgtact ataaaatcct gaacctttag ttctcgtgtt
     5521 acctattatc tcttttctaa ggccctgtct tttgagaaga catagtaaat ccagaaaata
     5581 aatactgtaa tactggtaaa tgacaaggca tctatttcct ttatttttcc ctttttaaaa
     5641 aaattaattg gatatattcc tttatatttc aaaagtttcc tatccataag ccccctattt
     5701 cctacccctc ccccataagg gtgttccc
//
