LOCUS       XM_039100374            1289 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus josephin-1-like (LOC102555573), mRNA.
ACCESSION   XM_039100374
VERSION     XM_039100374.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100374.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1289
                     /gene="LOC102555573"
                     /note="josephin-1-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102555573"
                     /db_xref="RGD:7559699"
     CDS             104..595
                     /gene="LOC102555573"
                     /codon_start=1
                     /product="josephin-1-like"
                     /protein_id="XP_038956302.1"
                     /db_xref="GeneID:102555573"
                     /db_xref="RGD:7559699"
                     /translation="MAALQTKGYEAVWWDKRRDVGVIALANVMGFIMNLPSSLCWGPL
                     KLPLKRQHRICVREVGGAYYNLDSKLKIPEWIGGESELRKFLKYHLRGKNCELLLVVL
                     EEVEAHQSWRADVLQTVLPDPLCLNPPDLFYVLWPLQSTSPNISLGFPFRFASAIGQI
                     CGL"
ORIGIN      
        1 cattgtgatt cggacgaaat ggaagaaaag gctgtctccg aacactgtgg tgacgcccca
       61 caagagcatg ctgtgaaatg ggaattatga tgtgaatgtc atcatggcgg cccttcaaac
      121 aaaaggctat gaagctgttt ggtgggacaa gcgcagggac gtgggtgtta ttgctcttgc
      181 taacgtcatg ggcttcatca tgaacctgcc ctccagcctg tgctggggtc cactcaagtt
      241 gcctctcaaa aggcagcacc ggatctgtgt tcgtgaggtg ggaggggcct actacaacct
      301 tgactccaaa ctcaagatac cagagtggat tggaggcgag agtgagctca ggaaatttct
      361 aaaataccat ttgcgaggta aaaactgtga actcctactg gtggtactag aagaagtgga
      421 agcccatcag agctggaggg ccgacgtgtt acagacagtt ctgcctgacc ctctttgcct
      481 caaccctcca gacctctttt atgtgctgtg gcctctacag tccacttccc caaacatctc
      541 attgggtttt cccttcagat ttgccagtgc aataggacag atatgtggac tgtaagagcc
      601 acccagcagt ctgtgcctgg gggaagaagg taggagttct gaacacttag ggcaagacat
      661 tgaactccct ttgctatttg aaagagggag ctgaaaaggg agtcatttga gggggcttgg
      721 ttattttctc ctttctatga ggtcttgaca caggttctgc tggtagtctt actgatgctt
      781 caggctcaca gagaggctgc ccccttttct ctcctgtggc accatggggt ctgaggacaa
      841 agtacatgca gagcccagtg actggctcaa aggacccaga gccaggaaac tatgtctcag
      901 gaaactgtca cgagtccagc aatggcactg catgccatct gcaatccatt atgccacctc
      961 ttagcccttt ttaaatccca gccagccttg gagttttata atgaaaagtt ctgatattcc
     1021 aaagtaggta aattgcacag tattctagca agacaatggt gaaacgtata cctaatacaa
     1081 tgtgggtaaa accacagtag ggcagtcaat ggtggttctt cactctaatt acgtccctac
     1141 catttcacta cattgactag ggaggctctg gggcaaaaga caatgagcag ggatagcact
     1201 catagttgac ccattttagc aaaatcagaa acacatctac cactgacatt aaattccata
     1261 gtttgggaca gagatgggtg aggaaactg
//
