LOCUS       XM_039090094            2004 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MLV-related proviral Env
            polyprotein-like (LOC102555557), mRNA.
ACCESSION   XM_039090094
VERSION     XM_039090094.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090094.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2004
                     /gene="LOC102555557"
                     /note="MLV-related proviral Env polyprotein-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102555557"
                     /db_xref="RGD:7646482"
     CDS             153..1901
                     /gene="LOC102555557"
                     /codon_start=1
                     /product="MLV-related proviral Env polyprotein-like"
                     /protein_id="XP_038946022.1"
                     /db_xref="GeneID:102555557"
                     /db_xref="RGD:7646482"
                     /translation="MTGRLANATSVRGTLADAFPPLYFDLCDVIDYKWEPGTTHNWHP
                     STTYYGCGPASHSKEIYVCPGHRVSRQCGGPGSGYCAQWGCETTGDAYWKPSSSWDLI
                     TLKRDGRPPYTLCKRDAKCNPLVLHFTDSGRRATWDGPKSWGLRLYVTGTDPVGLFSL
                     NRQVSPLATRPIGPNPVLPDQKPPSLPAQAQPPSLPKVTQAPGSTPTSPFSTTGGSTI
                     LISPSPGTGDRLFNLVAGAYLALNYSDPFRTQECWLCLVSGPPYYEGVAVIGNYTNLT
                     AAPDSCANTPSHRLTLPEVSGRGLCLGNVPPTHQTLCNTTQKIPIGNYFLAAPKGTYW
                     ACNTGLTPCISATVLNQSSDYCVLVEIWPKVTYHESEYIYSFFEKQTRFRREPATLTL
                     ALLLGGITLGGVAAGIGTGTTALIETGHFRQLQAAMNADLKAIEESVSALEKSLTSLS
                     EVVLQNRRGLDMLFLREGGLCAALKEECCFYADHTGIVRDNMAKLRERLAQRQKLFDS
                     QQGWFEGWFNRSPWFATLLSTLMGPLLILLLILLFGPCILNRLVQFMRDRLSVIQTLV
                     LTQQYHRLRQQETEIS"
ORIGIN      
        1 cactacaccc cagacatgga gagttcagcg cactccaaat cccttaaagt taaaactcct
       61 acgtggctcc tcctagtcct tttgtggcct agagtcagtg ggggaataag cccccaccaa
      121 tttataacat tacctggata gtcactaatc tcatgacagg aaggctggct aatgctacct
      181 ccgtaagggg gacactggcc gatgccttcc ctcccttata ctttgacctt tgtgatgtga
      241 tagactacaa gtgggagcct ggcactaccc ataattggca tccctcaacc acctactatg
      301 gttgcggtcc ggcttcccac agcaaagaga tctacgtttg ccctggacac agagtgagcc
      361 ggcagtgcgg agggccgggg agtgggtact gtgcccagtg gggatgtgag actactgggg
      421 atgcgtattg gaagccatcc tcatcttggg acctgataac tctgaaacga gacggtcggc
      481 ctccttacac cttgtgtaaa cgggacgcga aatgcaatcc cctcgtcctc cacttcaccg
      541 actcaggtag aagagcgacc tgggacgggc ccaaatcttg gggcctgcgc ttatacgtca
      601 cagggaccga tccggtgggt ctgttctctc taaatagaca agtctctccc ctggccactc
      661 gacccattgg acccaaccca gttctaccag atcagaagcc tccctcgctc ccggcacaag
      721 cccaaccccc gtcattgcct aaggtcaccc aggcccctgg tagtactccc acaagcccct
      781 tctccacaac ggggggctcc accattttga tctccccatc gccaggcacc ggggatcgat
      841 tattcaattt ggtggctggt gcatatctgg ctctcaacta ttcagaccct tttaggactc
      901 aggagtgctg gttgtgtctc gtttccggtc cgccctatta tgaaggggta gcagtcattg
      961 gaaattacac caacctgact gctgccccag acagttgtgc caataccccc agccacagac
     1021 taactctgcc cgaggtctcg ggacgagggc tctgcttggg gaatgtaccc cccacacacc
     1081 agaccctctg caacaccact cagaagattc ccatcgggaa ctacttcctg gcagccccaa
     1141 aaggcacata ctgggcctgc aataccggac taacaccctg tatctcagcc acagtcctca
     1201 accaatcctc tgactattgt gtattagtag aaatttggcc caaagtcacc taccatgaat
     1261 ccgagtatat atactcgttt tttgagaaac agactcgttt tcgacgagag cctgccaccc
     1321 tgactttagc tttactccta ggaggaatca ccttgggggg agtggccgcg ggtataggga
     1381 ccgggaccac tgcactcatt gaaactggcc atttccgtca gttacaagca gccatgaatg
     1441 cagatcttaa agctatagaa gagtctgtga gtgcattaga aaagtcctta acatcgttgt
     1501 ctgaagtggt cctccaaaat agacgagggc tagatatgtt gttcctccgc gagggtggat
     1561 tatgtgctgc tctaaaagaa gagtgctgtt tctatgcaga ccatactgga atagtaagag
     1621 ataatatggc taagcttcga gaacgcctgg cccaaagaca aaaactgttt gattcccaac
     1681 agggatggtt cgaggggtgg tttaaccgat ccccttggtt tgctaccctc ctgtctaccc
     1741 tgatgggacc cctacttatt cttctcctaa ttcttctttt tggaccctgc atccttaata
     1801 ggctggtaca gttcatgagg gatagacttt cagtcattca gaccctcgta ctgacgcagc
     1861 agtaccatag gctgagacaa caagagacag aaatttcttg accaagttga gtgaaagatt
     1921 tcactcaaag ttagcaaaaa aatgggggaa tgaaagaccc cagcttagca gcagtaacgc
     1981 cattttgcaa ggctgtactt aaga
//
