LOCUS       XM_039111479            1307 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor
            type, D like (Ptprdl), mRNA.
ACCESSION   XM_039111479
VERSION     XM_039111479.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 15% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1307
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1307
                     /gene="Ptprdl"
                     /note="protein tyrosine phosphatase, receptor type, D
                     like; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 10 long SRA reads"
                     /db_xref="GeneID:102554881"
                     /db_xref="RGD:7703644"
     CDS             1..771
                     /gene="Ptprdl"
                     /codon_start=1
                     /product="uncharacterized protein Ptprdl"
                     /protein_id="XP_038967407.1"
                     /db_xref="GeneID:102554881"
                     /db_xref="RGD:7703644"
                     /translation="MTIREKCYLQKFLMQRYSALRDPLNLSGADESVTPPHFREQDQR
                     AVLLTRAAALLSSGTEESSFPFFQCNQELSFYSRVRAQLQTGRARATAGSAHSASVGC
                     SASASLKVVSACARAVREGGGALRARGSRRRRGECPQVRRCARAGRGGADQAAAAGGS
                     ARDAGARTPLAGLLALAHRRSHPAPRAARAHLHFLNEPLDGCGGAAAAGRTGGGRQAA
                     EATETRSRVARPCPDHRLSMESTLRLPGAGQRQASCLC"
     polyA_site      1307
                     /gene="Ptprdl"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgacaatcc gagagaaatg ctacctgcaa aagtttttga tgcagcgata ttcagcctta
       61 agagatccct taaacctgtc aggagctgat gagtctgtca caccgcctca ctttagagag
      121 caagaccaga gagcagtttt acttactagg gcagccgctc tgctttcctc gggaacagag
      181 gagtcttcct tccctttctt ccagtgcaac caagaactgt ctttctattc cagggtccgg
      241 gctcaactgc agacagggag agcaagggct acagctggca gcgctcactc ggcatcggtg
      301 ggctgcagcg cttcggcttc tttaaaagtg gtatctgcgt gtgcgagggc ggtgcgggag
      361 ggtggcggcg cactcagagc ccgcgggtcc cgcagacgcc ggggcgagtg cccgcaggtg
      421 cggcggtgcg cgcgggcggg gcggggcggg gcggaccagg cggctgcggc gggagggagc
      481 gcccgggatg ctggggctcg cactccgctg gctggcttgc tcgcgctcgc gcacaggcgc
      541 tcgcacccgg ccccgcgcgc cgcccgcgct cacctgcatt tccttaacga gccacttgat
      601 ggctgcggcg gcgcggccgc ggcgggcagg accggcgggg ggcggcaggc tgccgaggcg
      661 acggagaccc gatcccgggt ggccaggcct tgccctgacc acaggctcag catggagagc
      721 accctccgac taccgggtgc tggacagcgc caggccagtt gcctctgctg acccacacag
      781 aactgcatga actcatgaag gaaatcaact ctgctgactg aactcactat actgactctc
      841 tgctaactga agaaacgcca ctgcattgaa cacgagtgac taaacacagc tcacggattc
      901 tccctgggct gctctctaat agcttttgtt tccttcccac cccaaccccc tgtgttgttc
      961 tcctgagagt taagcatatc ctaactctga ctcattctgt caaatctttc tgatttgtca
     1021 ctttgcctat taattagacg tcactttcaa acatggctgc ttatatctat aaactaaact
     1081 tatttacatt gtttaggatt aggtgtctgc taaaggtatg tttctattcc agacaaagta
     1141 gccatgttac tgtattaaaa tttctttata gtcatttcta attccacttt cagtggatct
     1201 aacgccttct gacctccatg aggaccatat gtgcaaatgc cacttatact tacactgtag
     1261 aaatcgttta tatgcataaa ataaaaagaa gtactttttt aaaaaaa
//
