LOCUS       XM_039111482            1679 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S27-like
            (LOC102554672), mRNA.
ACCESSION   XM_039111482
VERSION     XM_039111482.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111482.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 11% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1679
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1679
                     /gene="LOC102554672"
                     /note="40S ribosomal protein S27-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 37 Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:102554672"
                     /db_xref="RGD:7738149"
     CDS             1..333
                     /gene="LOC102554672"
                     /codon_start=1
                     /product="40S ribosomal protein S27-like"
                     /protein_id="XP_038967410.1"
                     /db_xref="GeneID:102554672"
                     /db_xref="RGD:7738149"
                     /translation="MYQNSYCTVLGLKRWLTVKGQHWLSFTAVTTSLQDLLHPSPEEE
                     KRKHKKKCLVQSPNSYFMDVKCPGCYKITMVFSHAQLVVLCVGCATVLCQPTGGKARL
                     TSFRRKQH"
ORIGIN      
        1 atgtatcaaa actcatactg tacagttctg ggactaaaga gatggcttac tgttaaagga
       61 cagcactggc tgtcctttac agcagtgacg acctccctac aagacctcct tcatccctct
      121 ccagaagagg agaagaggaa acacaagaaa aagtgcctgg tgcagagccc caattcctac
      181 tttatggatg tgaaatgccc aggatgctat aaaatcacca tggtctttag ccatgcacaa
      241 ctggtagtct tgtgtgttgg ctgtgccact gtactctgtc agcctacagg tggaaaagca
      301 aggctaactt ccttcaggag gaagcagcac tgaaagaaag cccctgattc aagatgagtg
      361 ggaaccttcc caataaacac atttggatta aaaaaaaaaa gcactggctg tatgggtgtg
      421 gtagcatacg cctttaatcc cagcactgga ggcagacaca ggtgaagctc tgtgagttca
      481 aggtcagtga gttccagtca gagctacata gtgagactgt cttggggagc atgaggggaa
      541 cacaaaaaag agcactggct gcttttcaga ggacccaggt tgaagtccta gaatccactt
      601 ggtggctcaa aattgtctga aacaaaaact ccagctctat cacctattcc tggcctctga
      661 gcatactggg cataccaggc acacacagct cacatatata cataggcaaa acactcatat
      721 acagaaaata aatcttctta aatatatttg ttatttgtgc atactacagt gtactatagt
      781 gtacaggtag aagtcaggga caactttata aagtcaagtc gttctctttc tcttcatgtg
      841 tattctaggg atcaaactta gatcagcaag cccctctgag ccatctcatc agtgtgtatt
      901 aactttttta gtattttcta gtaaaatcta caataattta caaatgtaaa aaatgttttt
      961 gcaccaggtg gtggtagcac acaaattcta gcactggaag aagaggcaag tggatctcta
     1021 aattcaaggc cagccctgtc tacacagaga aactgtattg aaagacaaaa acaaaacaaa
     1081 aacaaaaagt ttctgctcct ggattttgtg tttttgtatt ttaataataa acacattctg
     1141 cttttcctat tcttgatgtt ctatacaggg ctgccaaggg ctggagggat gactcagagg
     1201 ttaggagaat gtactgccct ggcagaggac caaactacaa ttgccagcaa ctaagacata
     1261 tggctcacca ttacctataa atcccaggcc agtggatcca acagctctgg cctccatggg
     1321 caccagcact cacatgcaca tactcactca atacacacaa aatgttttta aagttcctta
     1381 aataaatggc tcttcctaaa ttcatacaga aacagacaca tcttatttaa aaaaaaaaag
     1441 aaaaagaaaa aagaaaaaaa taaggtcaac aagatggctc agcttataaa ggagtttgtc
     1501 tcaaagtctg acaacctgaa ttcaatcact agcactcaaa tagtagaaga tataactccc
     1561 caaattatcc tctgaccgat acatgcatat gcatgaccac atacatacac aaaaacagac
     1621 acacatataa aataaatgta aaaaattttg gaagaaaatg gtttatattt ttagaaatc
//
