LOCUS       XM_039084773            2637 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus probable ATP-dependent RNA helicase
            DDX11-like (LOC102553881), transcript variant X1, mRNA.
ACCESSION   XM_039084773
VERSION     XM_039084773.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2637
                     /gene="LOC102553881"
                     /note="probable ATP-dependent RNA helicase DDX11-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102553881"
                     /db_xref="RGD:7520878"
     CDS             1070..1546
                     /gene="LOC102553881"
                     /codon_start=1
                     /product="ATP-dependent DNA helicase DDX11-like isoform
                     X1"
                     /protein_id="XP_038940701.1"
                     /db_xref="GeneID:102553881"
                     /db_xref="RGD:7520878"
                     /translation="MSLCVNEDVKSLGSVHLMNDRCVDMQRRKHEKMRIGEDKPKRRR
                     QKMQASCPFYNHEQMELLRDEILLEVKDMEQLVALGKEAQACPYYGSRFAIPAAQMLM
                     SILGRRSTLIQQTSSSALGVLLDRREMLRWPIRALIFVPLPGTTPSHYIPPGHLFL"
ORIGIN      
        1 gccggttttt ccgtttgcgc atgctccttc gttgaagctt caaagcttac cgctgctgct
       61 gggcttgcct gctggtctca gggagtccgc cctgcggatg agagcgaata cggtcctgcg
      121 tgagtgaaga actgacaccg aaggcagaga gggaaagtcc ttaagtctga tttgtggggc
      181 cctctcctgg ctccgggact ttgaacagaa gaaattgcaa gcagaggctg gtctcctcgc
      241 tcctgcatct ggccccacaa gtagtgggag gaactcagtc ctgtcttcct catcctgcca
      301 agaaccctct gacaccctga gacctgctgg agatcctgac tgggtcactg aatttgtgca
      361 gaagaaagaa gaaagggacc tggtggagag gctgagggag gagcagctga ggaggaggaa
      421 gcgagaggag cggctgcagg aggtctgcca ggatggaaga cgcaggtttg ctgccaagcg
      481 ctcgagacag gaggaagagg agaccgagac tctcctgcgc ctcagcaggg agatgcttgc
      541 tgcagacaca gcaccagagc agctggggca gctggagtgt ggggaggagc atctggttct
      601 ggcagaatat gagagtgatg aggagagaag aggcagcaga tttattactg cagtcggaca
      661 cactcacagc tggcccagtt tgtgcgtgag gtgcagaaga gcccttttgg caaggagacg
      721 cggctagtct cccttgggtc taggcaggta agcaaaagga ggtgttcttg tccagacaga
      781 tgcctcctcc tgtgtctttt ctcttggcct aggcatagac agaggttggt gagggcaagg
      841 tgggcctggg ggcagcgctc cttggttggc caaattataa ggtgcaggag acacagacta
      901 ggcagtgagt ccttcctttg tccttcagcc agcgccattt ctgttcttta tctttaaaga
      961 catctgtcag tgttcagtat ccaagatgtt cagctgagct cagaaatgcc ttgagtggga
     1021 gaaatcctct accccaggaa ccagtccacc attgcctatc caagaccaga tgagcctttg
     1081 tgtgaatgaa gatgtgaaaa gcctgggttc tgtgcacctc atgaatgacc gctgcgtgga
     1141 catgcaaaga cgcaaacacg agaagatgag aattggggaa gacaagccaa agagaaggag
     1201 acagaagatg caggcctcct gccccttcta caaccatgag cagatggagc ttctccggga
     1261 tgagattctg ctggaggtga aggacatgga gcagctcgtg gccctcggga aggaggccca
     1321 ggcctgcccc tattatggaa gccgctttgc catccctgca gcccagatgc tgatgtccat
     1381 tcttggcaga cgctccacac tgatacagca aacaagcagc tcagcactgg gtgttcttct
     1441 cgaccgcagg gagatgctga ggtggcccat tagagccttg atctttgtcc ctctgccggg
     1501 caccacacca tcacattata ttccacctgg acatttgttc ctgtgaacaa cagcctcaca
     1561 tattcctgca taccttgctc agggaggagg gttttactct gtgtttccag ttcagcgttg
     1621 gtattgagat gtgatcctct gcagtaatga ccacctgccc tcatcgtcag agagctatgt
     1681 ccttcctgac cccacatgca ccagctcctg taggacggag ccgtcatctg cagaggagaa
     1741 gcagaggagg gaaggcctta gatgcaaggt gagggaaccc caggtaccat ggacaagggc
     1801 aagcccacct ttgttgagaa cttcctactg catgagatac ccccgtgtag attacaactc
     1861 tggtaagagc caaagcgctc aggagggaag gacactggag caagtgcaga gacgggagaa
     1921 ctgatgggcc attgccttgt cctgaatgac taaagcctgc ccttgagaca tgcagtggcc
     1981 atcaagaata gccaaggcca tcgactactg gaggtcagca agttgtgtgt caggaagcta
     2041 atggaacagc acgtccttta gggcggggag ggaaaggggt cacatgtgcc attgggcttc
     2101 gtctcatgct gactctggga tagggagagt ccggaccctc tatgtcctgt gcaaactcag
     2161 gttccatagg gaatccatga ccatcctctg cagatgagga cagcagtcat gagtcccaga
     2221 aatgaaacca atggagaaca gaatcgatgg ggcggtaagt ggctgagaca cctgatagag
     2281 gactgagtga aaatgtgaca ggtcacgagg tcaggccagc catgtcctgt tcctagagtg
     2341 aggacagctc acactctgaa gtgtctgaca ggctggaaag tgttttcgtc tccccatctg
     2401 gattggataa ttttctatca atttggtaaa cttaaagtca ttggggatga aaatgttttg
     2461 ttgagaatat gcccttatca gattgtgagt gtgtctgtcc tacatttcat tattagtgat
     2521 tgactgtgtt tagtccagtt tgggtgacag cagacatggg agtagctagc cacttttgga
     2581 agataaatgg tttttgtctt cagagccatg gggaagcaat agagtcttga caggcaa
//
