LOCUS       XM_039100427            1929 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102553785
            (LOC102553785), transcript variant X1, mRNA.
ACCESSION   XM_039100427
VERSION     XM_039100427.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100427.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1929
                     /gene="LOC102553785"
                     /note="uncharacterized LOC102553785; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102553785"
                     /db_xref="RGD:7751972"
     CDS             81..1745
                     /gene="LOC102553785"
                     /codon_start=1
                     /product="uncharacterized protein CXorf49 homolog"
                     /protein_id="XP_038956355.1"
                     /db_xref="GeneID:102553785"
                     /db_xref="RGD:7751972"
                     /translation="MSSPDEAAVPAASEDKDSPPTGGMNFWDQVFVPEADLGQDSRKR
                     LGNPVTSRRVPEGPSLFRGPLEIGEGEGSLPGPESSELESGAKLEATEERGGVLRDPE
                     CQTTSPIDQEEVDLDFLPQLSNEAMTIMRELTNLQTRKVCRYPSPQTYAAELAALWEN
                     IDEGSNRRALSLSSVKGKQAFEGAPYPRGLGRGRAWVTPRRGTISRMVSSEVVQYPSS
                     NTVSSDELSDTQVRKVTTCLKEGDQARSSGLTELDNIGKHTTVHSRGNFVHVPPSVLS
                     SATWGLSSGMERQASAELESSLFKKKPNMGRGKEGSRSSHQGATAAAATTSAAAPGSP
                     SAASGALHKTSPKKKQVQEKNSSLDVSRGPQGRNLSPWGQRLKSAPVGLATLPPISGV
                     ALLGKASKCSLPSGPKECKPFCTGKKFMVKKSRETQAGPKEDNNSPRDPGLQAQVPPH
                     RAEQPSVCMYRGEMSSGDCNTRASQVPGNLQFLSLSQRCPRPRAPAPAGEEDAIVGAV
                     LPGEERQQELQGTPGCAQCLMFQKEIDELKEQLAVMQALNEKLQDL"
ORIGIN      
        1 gaggactttc cagaagcctc gagaagtcac gtgttctctg gacctgtgac aaaagtcctc
       61 gctttctcca tactgccgac atgagctctc cggatgaggc ggcagtccct gcagcctctg
      121 aagataagga cagccctcct accggtggta tgaatttctg ggatcaggtg tttgttcctg
      181 aagccgactt gggccaggac agcaggaagc gtttagggaa cccagtgacc agccgaagag
      241 ttccggaggg tccgagcctc ttccgaggtc ctctggagat tggagagggt gagggcagcc
      301 tcccaggccc tgaaagcagt gagttggagt ctggggctaa gttggaagca acagaggaaa
      361 gaggcggagt gcttagggat cctgaatgcc agaccacttc ccccatcgac caagaagagg
      421 tcgacctgga cttcttgccc cagctcagca atgaggccat gactataatg cgagagctga
      481 ccaaccttca gacccgaaaa gtctgcaggt acccatcccc acaaacttat gctgctgaat
      541 tggctgccct ctgggaaaac atagatgaag gctccaacag aagggcactg tccttgagct
      601 ctgtgaaagg gaaacaggcc ttcgaaggtg caccgtaccc tagaggcctg ggacgaggca
      661 gagcctgggt gaccccaaga agaggcacca taagtaggat ggtgagcagc gaggttgtcc
      721 agtatccctc ctcaaacact gtgtcttctg atgagttgag tgacactcaa gtgaggaaag
      781 taaccacttg cctcaaagaa ggagaccagg ccaggtccag tggcctcact gagctggata
      841 acataggcaa acatacaact gtccatagca gaggaaattt tgtccatgtt cccccttctg
      901 tactgtctag tgctacctgg ggactcagct caggcatgga aaggcaggct tcagcagaac
      961 tggaaagttc tttgtttaag aaaaagccaa atatgggcag gggcaaagaa ggaagcaggt
     1021 ccagccacca aggagctact gcagctgctg ccactacctc tgctgctgcc cctggctcac
     1081 cttctgctgc ttcgggtgct ctgcacaaga ccagtcccaa aaagaagcaa gtacaagaaa
     1141 agaactcctc cttagatgtg tcaagaggac cccaggggag aaacttgtca ccgtggggac
     1201 agagactcaa gtcagctcct gtggggctag ccaccctacc cccaatctca ggggttgccc
     1261 tgctagggaa ggccagtaaa tgctcactgc cttcaggacc caaagagtgt aagcccttct
     1321 gcactgggaa gaaattcatg gtaaagaagt caagggagac acaggcaggg cccaaagaag
     1381 ataataactc accaagagat cctggactgc aggcccaagt tccaccacac agggcagagc
     1441 agccttccgt gtgcatgtat cgtggagaaa tgagcagtgg agactgcaac accagagcat
     1501 ctcaagttcc aggaaacctg cagttcctgt ccttgagcca gagatgtccc agacccagag
     1561 cacctgcccc tgctggtgaa gaagatgcaa ttgtgggcgc ggtactccct ggtgaagaaa
     1621 gacagcaaga actacaaggg acaccaggct gtgctcagtg tctgatgttc cagaaggaaa
     1681 tagatgaact caaggaacaa ctagcggtca tgcaggccct caacgaaaag ttacaggatc
     1741 tctgaagttg gacccagatt ctctccccac agaagaggcc aaactactcc acccagggat
     1801 gctgcttcct tccagttctt ctacagcagt ggtttccagc ttcctaatgc tatggcctgt
     1861 tcatacagtt ccctgtgtca tgttaatccc caaccataaa gttatttctg ttgccgcttc
     1921 acaactgta
//
