LOCUS       XM_039080628            1978 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus keratin, type II cytoskeletal 6A-like
            (LOC102553726), mRNA.
ACCESSION   XM_039080628
VERSION     XM_039080628.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080628.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1978
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1978
                     /gene="LOC102553726"
                     /note="keratin, type II cytoskeletal 6A-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 95 Proteins, and 49% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:102553726"
                     /db_xref="RGD:7641984"
     CDS             1..1659
                     /gene="LOC102553726"
                     /codon_start=1
                     /product="keratin, type II cytoskeletal 6A-like"
                     /protein_id="XP_038936556.1"
                     /db_xref="GeneID:102553726"
                     /db_xref="RGD:7641984"
                     /translation="MSTQTVIRSQTSHRGFSAGSARLPGLTRSGFSSVSVCRSRGSGG
                     SRAVCGGAGFGSRSLCGVGSSKRISIGGGSCGIGGGYGGRFGGSFGYGLGAGGSLGFG
                     AGAGFGGGYGGAGFPVCPPGGIQEVTINQSLLAPMNLQIDPTIQRVRTEEREQIKTLN
                     NKFASFIDKVRFLEQQNKVLDTKWALLQEQGTKTVRQGLETLFEQYINNLRRQLDNIR
                     GQRGRLDSELRNMQGTVEDYKSKYEDEINRHSYAENEFVTLKKDVDAAFMRKVELQGN
                     ADSLADEVNFLRVIFEAELSQMQTRISDTSVVLSMDNNRSLDLDSIIAEVKAQYEEIA
                     KRSRAEAESWYQTKYEELQITAGRHGDDLRNTKQEISEINRMIQRLRSEIDHVKKQIA
                     KLQAAIAEAEQRGEMALKDARGKLEGLEDALQKAKQDMARLLKEYQDLMNVKLALDVE
                     IATYRTLLEGEECRLNGEGVGPVNISVVQSTMSSGYGSAGGASSSIGLGGGSSFSYGG
                     SHSIGGGFSAGSGRGISSGLSSSGGSSSTIKYTTTSSTRKSYRP"
ORIGIN      
        1 atgtctaccc aaaccgtcat ccggagtcaa accagccacc gtggcttcag tgcgggctca
       61 gccagactgc cagggctcac ccgctctggc ttcagcagtg tgtctgtgtg ccgctccagg
      121 ggcagtggtg gctcccgtgc agtgtgtgga ggagctggct ttggcagcag gagtctctgt
      181 ggtgtgggca gctccaagag gatctccatc ggagggggca gctgtggcat tggaggaggc
      241 tatggcggcc gattcggagg aagcttcggc tatggattag gagctggagg tagccttggc
      301 tttggtgctg gagctggctt tggtggtggc tatgggggag ccggcttccc agtttgccca
      361 cctggaggca tccaagaggt caccatcaac cagagcctcc tcgcacccat gaacctgcaa
      421 atcgatccca ccatccagcg cgtcaggact gaggagaggg agcagatcaa gaccctcaac
      481 aacaagtttg cctccttcat cgacaaggtg cggttcctgg agcagcagaa caaggtcctg
      541 gacaccaagt gggccctgct gcaggagcag ggcaccaaga ccgtgaggca gggtctggag
      601 actttgtttg agcaatacat caacaacctc cgcagacagc tggacaacat ccgtggacag
      661 aggggtcgcc tggactcaga actgaggaac atgcagggca cagtggagga ctacaagagc
      721 aagtatgagg atgaaatcaa caggcactca tacgcagaga atgaattcgt gaccctgaag
      781 aaggatgtag acgccgcctt tatgagaaag gttgaactac aaggaaatgc agacagtctg
      841 gcagatgagg tcaacttcct gagagttatt tttgaggcag aactgtctca gatgcaaacc
      901 cgcatctcag acacatctgt ggtcctctcc atggacaaca accgcagcct ggatctggac
      961 agcatcattg ctgaggtcaa ggcccagtat gaggaaattg caaagagaag tcgggctgag
     1021 gctgagtcct ggtaccagac aaaatatgag gaactgcaga tcacagctgg cagacacggg
     1081 gacgacctgc gcaacaccaa gcaggagatc tctgagatca accgcatgat ccagaggctg
     1141 aggtctgaga tcgaccacgt gaagaagcag attgccaagc tgcaagctgc cattgctgag
     1201 gctgagcagc gtggggagat ggccctgaag gatgccaggg gcaagctgga agggctggag
     1261 gacgccctgc agaaggccaa gcaggacatg gccaggctgc tgaaggagta ccaggacctc
     1321 atgaatgtca agctggccct cgatgtggag atcgccacct acaggacgtt gctggaagga
     1381 gaggagtgca ggttgaatgg tgagggcgtt ggaccagtca acatctccgt ggtgcagtcc
     1441 accatgtcca gcggctatgg cagtgcaggt ggtgccagca gcagcatagg cctgggagga
     1501 ggcagcagct tctcctatgg tggtagccac agcattggag gtggcttcag tgctggcagt
     1561 ggcagaggca tcagcagtgg actcagctcc tctggtggca gctcttccac catcaagtac
     1621 actaccacct cctccaccag gaagagctac aggccatgaa ttctgtctct tagagcttta
     1681 ccctgatccc agatatcatg gctgcagagc cctgtgctca gagccctgtg ctcagggcct
     1741 tctccttgct ggacaccaac ctctgctctc ttcttgtgct gaggaaattg tgtccttgtg
     1801 ctcatctgtc tgtccccact gctcatccct tgatagtcat gctctgagct cacatcatga
     1861 ttcacacaca cttggtgctt catgctgtat ttggtttcca ggctcctgcc tccctacctc
     1921 taacactgag gctgcctgtg aaagggtgtc tctgtcattt taattcttgg aatcattg
//
