LOCUS       XM_039098161            2493 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102553609
            (LOC102553609), transcript variant X2, mRNA.
ACCESSION   XM_039098161
VERSION     XM_039098161.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2493
                     /gene="LOC102553609"
                     /note="uncharacterized LOC102553609; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102553609"
                     /db_xref="RGD:7749912"
     CDS             40..501
                     /gene="LOC102553609"
                     /codon_start=1
                     /product="arabinogalactan protein 1-like"
                     /protein_id="XP_038954089.1"
                     /db_xref="GeneID:102553609"
                     /db_xref="RGD:7749912"
                     /translation="MAAAAGSGARGSPRCGQAPAAASRTAPTGSGVAAAAAAAAAAAA
                     AAAAPGRAGPLLAARAAPPRAAPAAAPAGAEEPRRTRGGPPPLAGRGRDGRGGAAFVP
                     RPQRARSSPKCTRPDLGPRVRVPCSIPGDPGPTDATGAPEPGSRVSRACGQ"
ORIGIN      
        1 aggctgggcc acgggaagcg ctcgaggaag agcagcggca tggcggcggc ggcgggctcc
       61 ggcgcccgag gctccccgcg ctgcggccag gcgcctgcgg cggcctcgag aacggcgccc
      121 acgggctctg gcgtcgctgc cgccgccgct gccgccgccg ctgccgctgc cgccgccgcc
      181 gcgccgggcc gggccgggcc gctcctggct gctcgcgccg ctccgccccg cgccgctccc
      241 gctgctgccc ctgccggcgc ggaagagcct cggcggactc ggggcgggcc accgccccta
      301 gcgggtcgcg ggcgggacgg gcgcgggggc gcggccttcg tcccccgccc acagcgggcg
      361 cgcagcagcc ccaaatgcac aagacccgac ctagggcccc gcgtccgggt cccctgcagc
      421 atccctggcg accctgggcc cactgacgcc acgggcgcgc cggagcccgg ctctagggtg
      481 agccgggcct gtgggcaatg acggcaggcc tgtgagcgtg gtcaggcggc aggacaccgg
      541 tccgttgctc ttccctggca aagcaggtga gaatgtcaaa tgttgctgag cttcttggaa
      601 aatacctgtt cctaaaagat aaaccaaggg gtgaccgttt gtcctggcag tttcactgct
      661 tgttaaaaaa acatacaaga gaaacgaaaa catataccca cacagtctct acatagaggt
      721 tgacagtagc atgtttccta ataacccaga gggaggaaac tccagtggaa tatagtgttt
      781 gaaaataaag tacagacaca tgccacaaaa tcagtgaacg ttgaagatgc ctgagtcaag
      841 ccacacagag ctaaattcta tcccgacgat aaaggcaaat gcatggagtg tggagtatta
      901 gtccccttct actggaggtg aggttggggt actagtttcc tgacgtgaga atattctaaa
      961 actgttgtta tacaactatg aatacactcg aagtcacaga attgtacact ataaccagca
     1021 agttacatct ctatatgtga attacataaa ataacatagg gtacactttt taatcatatt
     1081 cccaagccgt gtgttagtgc ctacctcaga atgtatgctc tgtaaacagt tgttgaattt
     1141 tctaaagggg ataaactgtc tattttttca agccaaatat ttctgtagtt ttttttttaa
     1201 tctgaaaatt aatcactttg ttataattct taaaaacacc catcatgggt ctttatacga
     1261 tagagttccc tttggtttgc tccccagtca tttgcaagat ggctcagggg acgacctgag
     1321 tttgattctc ctaactcccc caagtcctcg gacttcttta tctgtgtctc cctcatgcat
     1381 aactaaatgc aaaaataaaa caccaagcct taacactact gcccaaatac tggacatctt
     1441 tattctgaag gaatgagggt ggtaattttc cagagacagg ctctacttta caaggtcaga
     1501 tctgagtcac ggtgttcttt aaagcatttg cgattcacat tcaatgtgag ccacaaaaca
     1561 gtaatattag ataccaaact tgtcctctca cattgctgat aacaaggctg ccttctctaa
     1621 tctcaggagc ttgggccctc tgacaaccca tgttatgttc atgtgttaac agatgaaact
     1681 aacccagttc agttacattt taaaataata caaaagattt tggatttttt gtttttttgt
     1741 ttgttttgaa tgagaacagt cattgttctg tttacctctc cagaaagcac tttgcacttc
     1801 aaacttccct caaggatctg tttgagatac ttgttctcag tctaacccag cctggcctcc
     1861 agtttgaggc aattcccttg tctgaacctc ctgttaggtt agaggactga aagatgtgaa
     1921 ccaccacaac caaacacctg tctgtgtgtc tccattttcc ctcctccttt cctccctccc
     1981 tctcctccgc acactggaag gtttgtttat tttgaagaca gggtcttagt agtcttgaac
     2041 tgctgagctt taaatgatga gcttgactaa agtccaagaa gataggactt tagagcatgt
     2101 tcacaggccc agtgcaagaa ggactaaact ctaaagtcct atttaaagac tgtgtgtatt
     2161 tgtgtgtgcc tgcacaagtc tatgtgtatc acatgtatgc aagccgccac caggcctcag
     2221 atcctctgta actgcagtct caggcagtta tgagctgcca tgtgggtgct gagaattaca
     2281 cctggtgctt ctgatgagta gccagaggtc ctaactgttg agccatccct ctaaagtctt
     2341 acaaagtagc tcccacttgt gaccctgcag atgaagaaac agtccttaat gatacaaacc
     2401 acaggtagtt aatataactg cactgcaact ttaaggaccc agtcttcagg ctctgaatct
     2461 gtcaactgag agatagccag gcaatggtgg ctt
//
