LOCUS       XM_039084779            1849 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102553382
            (LOC102553382), mRNA.
ACCESSION   XM_039084779
VERSION     XM_039084779.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084779.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                JACYVU010000215.1  39088146-39088196   c
            52-52               "N"                1-1
            53-144              JACYVU010000215.1  39088054-39088145   c
            145-390             JACYVU010000215.1  39085807-39086052   c
            391-477             JACYVU010000215.1  39085334-39085420   c
            478-632             JACYVU010000215.1  39084769-39084923   c
            633-678             JACYVU010000215.1  39080887-39080932   c
            679-786             JACYVU010000215.1  39080123-39080230   c
            787-874             JACYVU010000215.1  39078504-39078591   c
            875-1080            JACYVU010000215.1  39077911-39078116   c
            1081-1233           JACYVU010000215.1  39076259-39076411   c
            1234-1280           JACYVU010000215.1  39075429-39075475   c
            1281-1360           JACYVU010000215.1  39075019-39075098   c
            1361-1405           JACYVU010000215.1  39074123-39074167   c
            1406-1473           JACYVU010000215.1  39073942-39074009   c
            1474-1712           JACYVU010000215.1  39069189-39069427   c
            1713-1849           JACYVU010000215.1  39064211-39064347   c
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1849
                     /gene="LOC102553382"
                     /note="uncharacterized LOC102553382; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102553382"
                     /db_xref="RGD:7696905"
     CDS             1..1719
                     /gene="LOC102553382"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: ATP-dependent DNA helicase
                     DDX11"
                     /protein_id="XP_038940707.1"
                     /db_xref="GeneID:102553382"
                     /db_xref="RGD:7696905"
                     /translation="MAEEGQEMGGIHFPFPFXPHPIQKYFMAELYKVLEAGKIGIFES
                     PTGMGKSLSLICGALSWLRDFEQKKLQAEAGLLAPASGPTSSGRNSVLSSSSCQEPSD
                     TLRPAGDPDWVTEFVQKKEERDLVERLREEQLRRRKREERLQEVCQDGRRRFAAKRSR
                     QEEEETETLLRLSREMLAADTAPEQLGQLECGEEHLVLAEYESDEERRGSRVDEGEDD
                     LEEEHITKIYYCSRTHSQLAQFVREVQKSPFGKETRLVSLGSRQSLCVNEDVKSLGSV
                     HLMNDRCVDMQRRKHEKMRIGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLEVKDM
                     EQLVALGKEAQACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQVVIIDEA
                     HNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYRKRLKAKNLMYIKQILYLLDKFVA
                     VLGGNVKQNPSTQSLPQTGSELQSINDFLFQSQVDNINLFKVTSSTGSAKNEPDGVLQ
                     RHWESLENDSLLRSQRAGLACGQNVQEKEASLHQRPHWPVVQCHAMLNSEEPEISRQQ
                     KESERC"
ORIGIN      
        1 atggctgaag aaggccagga gatgggtggc atccattttc cgtttccctt cnccccccat
       61 cctatccaga aatacttcat ggcagaactc tacaaggttt tggaggctgg caagattggg
      121 atatttgaga gtccaactgg catgggaaag tccttaagtc tgatttgtgg ggccctctcc
      181 tggctccggg actttgaaca gaagaaattg caagcagagg ctggtctcct cgctcctgca
      241 tctggcccca caagtagtgg gaggaactca gtcctgtctt cctcatcctg ccaagaaccc
      301 tctgacaccc tgagacctgc tggagatcct gactgggtca ctgaatttgt gcagaagaaa
      361 gaagaaaggg acctggtgga gaggctgagg gaggagcagc tgaggaggag gaagcgagag
      421 gagcggctgc aggaggtctg ccaggatgga agacgcaggt ttgctgccaa gcgctcgaga
      481 caggaggaag aggagaccga gactctcctg cgcctcagca gggagatgct tgctgcagac
      541 acagcaccag agcagctggg gcagctggag tgtggggagg agcatctggt tctggcagaa
      601 tatgagagtg atgaggagag aagaggcagc agggtggatg agggtgagga tgacttggag
      661 gaagaacata taaccaagat ttattactgc agtcggacac actcacagct ggcccagttt
      721 gtgcgtgagg tgcagaagag cccttttggc aaggagacgc ggctagtttc ccttgggtct
      781 aggcagagcc tttgtgtgaa tgaagatgtg aaaagcctgg gttctgtgca cctcatgaat
      841 gaccgctgtg tggacatgca aagacgcaaa cacgagaaga tgagaattgg ggaagacaag
      901 ccaaagagaa ggagacagaa gatgcaggcc tcctgcccct tctacaacca tgagcagatg
      961 gagcttctcc gggatgagat tctgctggag gtgaaggaca tggagcagct cgtggccctc
     1021 gggaaggagg cccaggcctg cccctattat ggaagccgct ttgccatccc tgcagcccag
     1081 ctggtggtgc tgccctaccc aatgctgctg cacgcagcca cccggcaggc tgcgggaatc
     1141 aggctgcaag ggcaggtggt cattattgac gaggctcaca acctgatcga caccatcacc
     1201 aatatccaca gcacagaggt caatggttcc cagctctgcc aggcccattc ccagttgctc
     1261 cagtacatgg aaagatacag gaagcgttta aaggccaaga acctgatgta catcaagcag
     1321 atcctgtact tgctggacaa gtttgtggct gttttgggag gtaacgttaa gcaaaaccct
     1381 agtacacaga gcctgcctca gacagggtct gagctgcaga gcatcaacga ctttctcttt
     1441 cagagccagg tggacaacat caacctcttc aaggtgacgt cctccactgg aagtgctaag
     1501 aacgagccag atggagttct ccagaggcac tgggaaagct tagagaacga cagcctcctg
     1561 agaagccaga gagcagggtt ggcatgtggg cagaatgtgc aggaaaagga ggcctctctg
     1621 catcagagac cgcactggcc tgtagtccag tgtcatgcca tgttaaactc agaagagcct
     1681 gagatctcca ggcagcagaa agaatcagag agatgctgat gtccattctt ggcagacgct
     1741 ccacactgat acagcaaaca agcagctcag cactgggtgt tcttctcgac cgcagggaga
     1801 tgctgaggtg gcccattaga gccttgatct ttgtccctct gccgggcac
//
