LOCUS       XM_039101325            3131 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102553046
            (LOC102553046), transcript variant X1, mRNA.
ACCESSION   XM_039101325
VERSION     XM_039101325.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101325.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3131
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3131
                     /gene="LOC102553046"
                     /note="uncharacterized LOC102553046; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 15 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:102553046"
                     /db_xref="RGD:7689565"
     CDS             1830..2657
                     /gene="LOC102553046"
                     /codon_start=1
                     /product="collagen alpha-1(III) chain-like"
                     /protein_id="XP_038957253.1"
                     /db_xref="GeneID:102553046"
                     /db_xref="RGD:7689565"
                     /translation="MKLSIHRPQADLVPPQSHYQHWPVRRRNPRTAKNMRCQKCSEPR
                     RPRSMSASASPTLPDSSLRSTEVRVPQASTPIVFTGIPGCPAQDPGTGHRILPPELPR
                     TDPRRLHAAAQSAPPCRPGQSGPGRRLHLPGCGAPAGQRERGWRGRTGRRRAHSPDAK
                     GGCWRLLVVVAGWPRAHGRRALSQGASGAGGARGRRPRGAWRLRAGASGGTAAPRKED
                     NSLPLPQAAGSRGRPGTIWSSRPRGAWGGARVTPSPPGAMATAAPLGSCSGSPVGGL"
ORIGIN      
        1 acccagagac ctgttcgtca ggctactagt tgcccaagac cagggaaaac ctgccagagg
       61 aggccccaaa gcaaactcct gctttcagaa ggtctgcagg tgggccagcc tctctgggca
      121 tctctaggtg ggcttgttcc aggacccctg agctttgatc tcagccctga gagcagagaa
      181 acacggaaac aaggagattc tggaacagaa gccaagtgtt gacttctatg gcctcctctg
      241 gggaggttga agaggaggct catgggaaga atgaagatgg gaggaggaac gacctgcttc
      301 tcagctggag gactttcagg actaagcact agcatggacc aaggagtctc aactacaaac
      361 cacatgacct gagtgctggg ccactgaaac agatcgggtt tggcacatct ggaatgggcc
      421 tgggacttcc attcccaggg agggccacta atgtccaaag atgacaagca agcagctggg
      481 actgcttagg gacctctgag agctgagaag gcacaaagtg tctggagtga gtgtgtctgt
      541 gggtggcttc tgtgtatggg tgcaagccct atcccaagct aaataaaatt cgtcttctca
      601 ctccagaccg gagtgagccc caagccaggc cagatgaagt cggcccgaga actcatcaga
      661 ctgaactgac aactagagga agaagtgcag ggcttaacag cttctggaag tcaaagctga
      721 ataaatgacc agagggtgaa taatacatta gggcagacag ggattttggc aaagtaaaaa
      781 tcttatttga ctcaaaggat aaatggatgg attggcatgg aagagaaaaa aagagtcaca
      841 gtaaaaccta gggtgcttta aaaagcaaga gaaagatgca tcagggaaag aacaggaggg
      901 ggagaaaaaa aaaacaaccc agcctttccc caggcagtga gaaatttggg cactgtgctt
      961 aaggcacagg gattttcatt ttctccttta gaatttgcta tttaggctga gcatggtgtt
     1021 gctcacatgt gatctcggca cccaagaaac cggcaggaag atcacctggt ctaaaaaaaa
     1081 taataaatga aaaatccttc acccagggca taattattca gactcacttc ccttcactta
     1141 ccacccccgg tccctaagct tgagctgaca tcagtttctt taccggaaaa aaatctaagc
     1201 tccatcttag cttttccttc actcccccac tccatcctgt gctcctctca acacgccgag
     1261 cgagcgagag gctgccccac gcttaagctg aggcgcacac atacacatct gaaactcact
     1321 cttctctctt caccttcaag agaaacgggg ctgtggatat cgactggcaa tacctacaaa
     1381 cccaggctct caaaattgga attgtaatgg gggaagacag ctgagaaaca gcccacagag
     1441 aaaccatgtt aggatgcatt cttagacaag catgcagtgt catgggctcc tggggtgcag
     1501 gaggctggag ccaaagtgga tggtgtatat ggaatgtgga gcttgaattg gaacgccagc
     1561 caggcagcct tgctgggtag ttatgtgaca ggcagaatct acaggcccgt aaataaatgt
     1621 acagggcccc agaaacacct tacacaacgc ttcttcctca ctgccttgag aggttttatc
     1681 ctctcaagca gctacagcca tctccaccaa cgtgtccact tctcttatta gcgagagccc
     1741 taaaaagcag catggagcta tagctaccac cgtggagagg aaaagcccac gcagccccat
     1801 agccagctgc caacaagctg cggagctaga tgaagctgag tattcacagg ccccaggcag
     1861 acctagtgcc tccccagtcc cactaccagc actggccggt ccgccgcagg aacccacgca
     1921 ccgctaaaaa catgcgctgc cagaagtgct ccgagcccag gcgaccccga tccatgagcg
     1981 cgtctgccag tccaactctt ccagactctt ctctgcgctc cacagaggtc cgcgtgcccc
     2041 aagcctcgac ccccatagtc ttcacaggga tacctggatg tcccgcacag gacccgggca
     2101 ctgggcatcg catcctccct cctgagcttc ccaggaccga cccccgccgc ctacacgcgg
     2161 ccgcacaaag cgcgcctcct tgccggcccg gacaaagcgg gccggggcgc cggctgcacc
     2221 tacctgggtg cggagcgcct gcggggcagc gggagcgcgg ctggcggggg cgcacaggtc
     2281 gtcgccgcgc ccacagccca gacgcgaagg gtggttgctg gaggctactg gtggtggtgg
     2341 cggggtggcc cagggcgcac ggcaggaggg cgctgtcaca gggcgctagc ggcgcggggg
     2401 gcgcgcgggg ccggcggccg cggggcgcgt ggcggctgcg cgcgggcgcg agcggcggga
     2461 ctgcggcgcc gcggaaggag gacaatagcc tccccctgcc gcaggccgcc ggctcccgcg
     2521 ggaggcccgg gaccatctgg agctcgcggc cccgcggggc ttggggcggg gcgcgagtca
     2581 ccccctcccc acccggcgcc atggcaaccg cggcccctct aggttcctgc agtggttctc
     2641 cggtaggggg tctctgacct tccccggggc aaatgcagga ctgtcgctcc ttcggtagtt
     2701 cccgaccccc cactgtcttc cgcgtgggcg ccccgcttga cccccacctt ccggtcctcg
     2761 ctagccccgc gacacccttg ggcgtctggg taccacccat agttaaccag gcttattctt
     2821 cccagtttgg acattccacc tttgtctctg tcgcgccttt gcctggatgc gcaatccttt
     2881 taaatgtcac ttacctccga ggtttccccg agatgcggcc tccgtttcct tttcaaatgt
     2941 ccccttttgg gcacctccag gccatctcgc ttaagcgttt ctctctgcct ttcccccttt
     3001 ctctcgtcct ccttccggca ggtaggctgg cccgctttcc aaaagcatct ccatggtgct
     3061 cctggagatt cgccttctca caaatcagat tctcggaacc gtcatcacag cggctcctca
     3121 gctcctctca t
//
