LOCUS       XM_039087650            1878 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102552988
            (LOC102552988), transcript variant X1, mRNA.
ACCESSION   XM_039087650
VERSION     XM_039087650.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087650.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1878
                     /gene="LOC102552988"
                     /note="uncharacterized LOC102552988; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102552988"
                     /db_xref="RGD:7517962"
     CDS             81..953
                     /gene="LOC102552988"
                     /codon_start=1
                     /product="uncharacterized protein C17orf78 homolog isoform
                     X1"
                     /protein_id="XP_038943578.1"
                     /db_xref="GeneID:102552988"
                     /db_xref="RGD:7517962"
                     /translation="MDTILVFSLMIASYDSNKNDLRKSSCQVEQLPSFFPEDVRSNRD
                     LVIRVPPEIHTDIKGAPFIRNQTIATLQCLGSRRRVTVHLVYSERRPKVKYILKNRPV
                     ATDLPRNRTASPSCHLRPTSQFQNGFLLTAFLPGISQCTVYPAKDRSALSETVPVTAI
                     STSLRRKGEETPSTGAFPIPLTQDIDLSLKRRQKWSIVVKALIAATLLLSGAAIIVFV
                     IFEVPCPCQCLRARRLCQRQWLWRRERKEEDQQPGTTESKLDSQPEKVGQDVPNSSAS
                     KKTTGTTVIHQTYF"
ORIGIN      
        1 aggacagtaa acgcaacggg aggcaaggct gtaaggggct gtgacagagc aacagtaagc
       61 gctcatgaac tcaggctggc atggacacca tcttagtctt cagcctaatg attgcatcct
      121 acgattccaa caagaacgac ctcagaaaga gcagctgcca agtggaacag ctgcccagct
      181 tcttcccaga ggatgtgcgg agcaacaggg atttggtaat aagagttcct ccagaaattc
      241 acacagatat caaaggggcc ccattcatcc gaaatcagac gatagctacc ctgcagtgcc
      301 ttggctccag gaggagagtg acagtccacc ttgtatattc agagagaagg ccaaaggtca
      361 agtacattct gaagaaccgg ccagtcgcta ctgatcttcc tagaaaccgc actgcttccc
      421 caagctgtca cctcaggccc acgtcccagt ttcagaacgg attccttcta acagcttttt
      481 taccagggat ctcacaatgc acggtgtacc cagcgaagga cagatctgct ttgtcagaga
      541 cagtgcccgt cactgccatc tctacatcgc tgagaagaaa aggagaggaa actccaagca
      601 ctggggcttt ccccatccct ttaacacaag acatagacct gtccttaaag aggaggcaga
      661 aatggagtat cgtagttaaa gctctgattg ctgctactct gctgctcagt ggggccgcta
      721 ttatagtgtt tgtcatcttt gaagtccctt gcccgtgtca atgcctacga gccagacggc
      781 tgtgccaacg ccagtggcta tggagaaggg aaaggaagga agaagaccag caacccggga
      841 caactgagtc caagttggac tctcagcctg agaaggtcgg acaggatgtt cctaactctt
      901 cagcctcaaa gaaaacaaca ggcaccactg taatccacca gacatacttc tgagctctgc
      961 ttcgcctgac tctgaatgta ggtgctgtct tcgacaccac cgtctcctca ttgcaaatca
     1021 ataggcgatg acacttgaag ctctcacact catcttcacg gggacattac aatcaaacgg
     1081 catgcccaga cagcgaagga agagcgtggg tagagcagag ctaccttcat gccgctgcaa
     1141 ctgacacggc cataagcctc cgtgattcgc tctgcacagt tactctccat cccagcaaat
     1201 gaagacaaag tccttgcctc caagcgttcc gaatggatct tactgctctc cgggataaaa
     1261 gacaaacaca gcctccaaag gccgggaggt gacactgcac tgcggcacac atcccggctc
     1321 cacttagcct cctagctttc ctcgtactca ctggctgtca tttaccttcc acagctgcac
     1381 ctgccgctat cagcaacctg aatgttccat aacccagaac atgagatttc ccagaagata
     1441 agagctgtgc tgggtctgtg ctcatcagtt ctgctcttct gtgggacaat aacctgtgtc
     1501 acatctgtac tggctttctt cgtggaatct gacaaggtcc aaactgtgca ttctgtgtgg
     1561 ggacagttgt cttggcaaaa gcgagaatct tctgagcatt tcccctctcc ctaatcagct
     1621 aacagctttg aatccctccc ccagtgcagg gaggatttgg aaactaggag ctgagaagag
     1681 caaaggaagg gggcactccg tgtggacttt gcaatgtgga cttcagtctg cagattgccc
     1741 cagagtcaca caaatgctcc ggcatcagtc tagatacgct cttacaaaac actcaatgcc
     1801 agtgaatcct ctgcagagca ccaaattcct gttgcaaatg atttctcatt aaagtttcat
     1861 gttttgtttt tctgatta
//
