LOCUS       XM_039084814            4042 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102552880
            (LOC102552880), transcript variant X1, mRNA.
ACCESSION   XM_039084814
VERSION     XM_039084814.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4042
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4042
                     /gene="LOC102552880"
                     /note="uncharacterized LOC102552880; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 99 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102552880"
                     /db_xref="RGD:7606582"
     CDS             64..1083
                     /gene="LOC102552880"
                     /codon_start=1
                     /product="translation initiation factor IF-2-like isoform
                     X1"
                     /protein_id="XP_038940742.1"
                     /db_xref="GeneID:102552880"
                     /db_xref="RGD:7606582"
                     /translation="MAATPLPCCDRTTWEWGIRDPVQDLGRSPRVGSPHSHFEARDQP
                     GATSPQHSFLNKSSPERCPPATGHLPFHHPPLLQVAARARGSSLARSSPGGATSSGAG
                     MRPVPQPRAAPRPAPPASPELAPRALRGLRVWSSRALPRPGAGAARGRLPGAPRTQAG
                     SVRGGPVCSGGYGCEGRRPAGRARARLGRPHPHRGALRRGEPGGHELGRGARARAAAW
                     PLPTRSLACAVPGALGPHAQPRPTPDPARTALRRHILQLAAARARRERASSQPPRRAR
                     RRLPPRPRARPGPFRTRPALTCSLAQLQTLAVGSRVRQRASQDGMEWGHGASLSRHVP
                     ELGCT"
ORIGIN      
        1 tttcccaaag caaacttaca taagcagccg cagccgcctc cttattccgg agcagctgcg
       61 acaatggcgg ccacaccact tccctgttgc gaccgcacaa cttgggagtg gggaatccgg
      121 gaccccgtgc aagacctggg gcgcagtccg cgcgtgggga gcccacactc gcatttcgaa
      181 gcccgtgatc agccgggtgc aacgagccct cagcattctt tcctaaacaa aagctcccct
      241 gagcggtgcc cgccagcgac aggccacctt cccttccacc atccgccact tctccaggtc
      301 gcggcgcggg cgcgaggctc ttctttggcc cgcagcagcc ccggcggcgc gacaagctcc
      361 ggagcgggca tgcggccggt tccgcagccc cgcgccgcgc cgcgccctgc tccgcccgcg
      421 agcccggagc tcgcgccccg cgcactccgc ggcctgcgcg tctggtcctc ccgcgccctc
      481 ccgcggccag gggcgggggc ggcgcgcggc cggctccccg gagctccgcg gacgcaggcg
      541 gggagcgtgc gcgggggtcc cgtctgctct ggagggtatg gctgcgaggg gcggcgcccc
      601 gcgggccgcg ctcgggcccg gctcggccgt ccccaccccc accgcggtgc actgcggcgc
      661 ggagagccgg gcggccatga actcggccgc ggagcgcgcg cgcgggccgc cgcctggcct
      721 ctccccaccc gctcgctggc ctgcgcggtc cccggggcgc tcggccccca cgcccaaccg
      781 cggcccacgc ccgatcccgc tcgcaccgcg ctgcgccgcc acatcctgca gctggctgct
      841 gcccgagctc ggcgggaacg cgcctcctct cagccgcccc gccgcgcccg ccgccggctg
      901 cccccgcgtc cccgcgcccg ccccggccct ttccgcaccc ggcccgcgct tacctgcagc
      961 ttggcacagc tacagacgct cgccgtgggc tcccgcgttc ggcagcgcgc aagccaggac
     1021 gggatggagt gggggcacgg tgcatccctc tctagacatg ttccagaact aggttgcact
     1081 tgatgcttcc atggagagat cagatgggct ggcaatgtca gcacatccat gtaagttata
     1141 ggtccgatgc tgttgaaacc ttgtatcctc tgtgaggcac ttcctgatcc tctttacatg
     1201 ctctcaggcc cacgacctga gaagtccctt tagctcccac attttctgct caacccgcaa
     1261 tactggcagt tggattgagc tatcgttgct cctaagtgtc acttctgctg ctctgtcaca
     1321 cttctaagtc ttatgtcaaa tcacgtgaat aacatctgaa attagggcag gaccgtggac
     1381 ttatgggaag atggagaaga atgcctgtac caggcacata agtaaacgtg aaggaatact
     1441 gtgaccgcct cttattttct aaaggacatc ctattgagcc tcagctgtaa tattaaccaa
     1501 tactggtttc atgtctccca aggtgtttta atacacatct tcaaactttt attttttgtg
     1561 catgcatgtt ttgcctgcgt gtgtgcagca cgtcgtgtgc ctgcctggtg gcagtgcagg
     1621 tcattcagaa gagggtgtca gatcccctga gactggagca ggatgattgt tattcaccac
     1681 atgagttctt ggagctcaac ctgggtcccc tgcaagagaa cagaaagtgc tgcaaactgc
     1741 tgggccacag ttttggctcc cactcatgtc tactgatgca cacactagca ctggtgttgg
     1801 taggtttggg gaaagacttg tgatgtcagg cctcgatttt attgtgagtg tatgtgcgca
     1861 tgtgcacata gaggggctag tgcatatgag tgcttatgcc cctagaagcc acaggcattg
     1921 gatgccctgc agccgtagtt acagaccatc gtgagccacc agacatgggt cctggtcctc
     1981 tggaagggga gcaaatgcct ttaaccgtga gtcatctctc cagcctttta agccccagtc
     2041 tcttttctgg tccggagaca aagagatcaa ggcagttgtg aggactgacc aatgcaacgc
     2101 ccagctaagc ttttggtgca aatgttaacc ccctgttgtt aaggagatac tactcatggt
     2161 gttggagtcc accatcatgg caggaagtgg cccccatccc tggcaccctg cctatttgct
     2221 cagttcttgt ttgcacagct ctgcgttcac acttttgccc tgtctgtgtt ttgcttacca
     2281 gggactaata atatccatct cttgtggggc tctgtcatga ggcaataggg cgatggctca
     2341 agttcacggt gcggggagca tggccggctt ctggtaatct tcacggtcac cacctgccac
     2401 tgctcttggg ccacacctgg aagggcttca ctcccggatt tattgtttgc ctcccgtgta
     2461 gacatggtcg ttttgcctac ggaagagaat ctgtctttgg attttgccag agccgatgaa
     2521 attagattag ttaaacagag tttgtaaaca ttagaacaat gaagtgcctg gctttttttt
     2581 ttttcctttt gtatcaatta ctccttgaat tcatgtgcat ggcgcctgtg ctctgcctgg
     2641 ctggtccttc cctatcattg ggactcagag gaacaaacaa aaactcctcc atcccttgtg
     2701 ggaaacccct tgcctattcc tacgccctta gcatctaata ggctcctaga agacaccagt
     2761 tgacagcaag aatcaaccca gagtaagggt aataaagggc acagtgtgca gttcataggg
     2821 atcaaggccc tcttggaata cattgaaagg caaggccctt gacgtgttct tccttttcta
     2881 ctaacaacgg ctgtctcgga aaacaactgc tggggtcact cagagcaccc tgttttcctc
     2941 gtagcacgct cacagcctct gaaacgaaac ctgtttctga gaagtgtgag gctggtctgt
     3001 aggacacaac agtgtggcat gcgggacacc atggcttagg tagaaccata aggaacagct
     3061 gaaaggtgtc ctgttatctg gggtttttaa tgggtgagtg gagttgctgt ctccctcaca
     3121 ttgaccatgg ggtctactgc tggttttggc tatggatatg agtactagag attggacaac
     3181 gtctaagtag tggctttgag tggtccacgt tctgttcctc acgcccgtgg ttgtctgcgt
     3241 ttaaaggaac cctcaggtca ccgcttcttc tgctgccttg aatgacaaac gtcttagagg
     3301 atgcgaccgg ttgcaaacga actgaaccta gccaactcca ggtaggccac agctcaacaa
     3361 aggaaaacaa aagcctcacc tagcgctgta agtacccttc catcttcctg ccccgagaac
     3421 gctggatacg gtgatgaaca aagtaatatg acgacacaga gataaagata ctcgcacgca
     3481 acagacgtcc caacaaggac cttagcacaa gggtttaaaa gcatatgcca ccatggaaaa
     3541 ggaacgtggg aactagattc agatgagaaa tcagtaaagg cttcatttca catctaaaac
     3601 ccgtaggatg acaggggcta gcagaaggga gagggaagca aaatttcaga caccagtgta
     3661 ttagggttct ctacagcagc aacttacgtg atggctctat atataagaag ggggttatta
     3721 gaacgactta caggccacag ttcagctgat acatcagtgg ctggctatga accaaagtct
     3781 gagaacccag atgtttctct gtaggatgat gtcatacagg tgaaggtagg tacaggatag
     3841 aaggaggcct gtcattggac aggaaggaaa gatgggcggg agaaaagttt tagaggagga
     3901 ggagactgga ggagagagaa gaggagccgc tgatgttgag attcctctct gcccatttac
     3961 aggttgttat gaatgttctt aagggatgga tgtgtacagg gctttgtgtg tctaggtggg
     4021 caattatatc ttatcaattg ga
//
