LOCUS       XM_039108560            1859 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MLV-related proviral Env
            polyprotein-like (LOC102552749), mRNA.
ACCESSION   XM_039108560
VERSION     XM_039108560.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108560.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1859
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1859
                     /gene="LOC102552749"
                     /note="MLV-related proviral Env polyprotein-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:102552749"
                     /db_xref="RGD:7550011"
     CDS             42..1550
                     /gene="LOC102552749"
                     /codon_start=1
                     /product="MLV-related proviral Env polyprotein-like"
                     /protein_id="XP_038964488.1"
                     /db_xref="GeneID:102552749"
                     /db_xref="RGD:7550011"
                     /translation="MTGRLANATSVRGMLADAFPPLYSDLCDVIDYKWEPGTTHNWHP
                     STTYYGCSPASHSKEIYVCPGHRVSRQCGGPGSGYCAQWGCETIGDAYWKPSSSWDLI
                     TLKRDGRLPYTLCKRGAKCNPLVLHFTDSDRRATWDGPKSWGLRLYVTGTDPVGLFSL
                     NRQVSPLATRPIGPNLVLPDQKPPSLPAQAQPPSLPKVTQAPGSTPTSPFSTTGGSTI
                     LISPSPGTRDRLFNLVAGAYLALNYSDPFRTQECWLCLVSSPPYYEGVAVIGNYTNLT
                     AAPDSCANTPSHKLTLPEVSGRGLCLGNVPHTHQTLCNTTQKIPIGNYFLAAPKGTYW
                     ACNTGLTPCISATVFNQSSDYCVLVEIWPKVTYHESEYIYSFFERQTHFRREPATLTL
                     ALLLGGITLGGVAVGIGTGTTALIETGHFRQLQTVMNADLKAIEESVSALEKSLTSLS
                     EVVLQNRRGLDMLFLLEGGLCAALKEECCFYADHTGIVRDNMAKLRERLAQR"
ORIGIN      
        1 cccaccacat ttataacatt acctggatag tcactaatct catgacagga aggctggcta
       61 atgctacctc cgtaaggggg atgctggccg atgccttccc tcccttatac tctgaccttt
      121 gtgatgtgat agactacaag tgggagcctg gcactaccca taattggcat ccctcaacca
      181 cctactatgg ttgcagtccg gcttcccaca gcaaagagat ctacgtttgc cctggacaca
      241 gagtgagccg gcagtgcgga gggccgggga gtgggtactg tgcccagtgg ggatgtgaga
      301 ctattgggga tgcgtattgg aagccatcct catcttggga cctgataact ctgaaacgag
      361 acggtcggct tccttacacc ttgtgtaaac ggggcgcgaa atgcaatccc ctcgtcctcc
      421 acttcaccga ctcagataga agagcgacct gggacgggcc caaatcttgg ggcctgcgct
      481 tatacgtcac agggaccgat ccggtgggtc tgttctctct aaatagacaa gtctctcccc
      541 tggccactcg acccattgga cccaacctag ttctaccaga tcagaagcct ccctcgctcc
      601 cggcacaagc ccaacccccg tcattgccta aggtcaccca ggcccctggt agtaccccta
      661 caagcccctt ctccacaaca gggggctcca ccattttgat ctccccgtcg ccaggcacca
      721 gggatcgatt attcaatttg gtggctggtg catatctggc tctcaactat tcagaccctt
      781 ttaggactca ggagtgctgg ttgtgcctcg tttccagtcc gccctattat gaaggggtgg
      841 cagtcattgg aaattatacc aacctgactg ctgccccaga cagttgtgcc aataccccca
      901 gccacaaact aactctgccc gaggtctcag gacgagggct ctgcttgggg aatgtacccc
      961 acacacacca gaccctctgc aacaccactc agaagattcc catcgggaat tacttcctgg
     1021 cagccccaaa aggcacatac tgggcctgca ataccggact aacaccctgt atctcagcca
     1081 cagtcttcaa ccaatcctct gactattgtg tattagtaga aatttggccc aaagtcacct
     1141 accatgaatc cgagtatata tactcatttt tcgagagaca gactcatttc cgacgagagc
     1201 ctgccaccct gactttagct ttactcctag gaggaatcac cttgggggga gtggccgtgg
     1261 gtatagggac cgggaccact gcactcattg aaactggcca tttccgtcag ttacaaacag
     1321 tcatgaatgc agatcttaaa gctatagaag agtctgtgag tgcattagaa aagtccttaa
     1381 catcgttgtc tgaagtggtc ctccaaaata gacgagggct agatatgttg ttcctcctcg
     1441 agggtggatt atgtgctgct ctaaaagaag agtgctgttt ctatgcagac catactggaa
     1501 tagtaagaga taatatggct aagcttagag aacgcctggc ccaaagataa aaactgtttg
     1561 attcccaaca gggatggttc gaggggtggt ttaaccgatc cccttggttt gctaccctcc
     1621 tgtctaccct gatgggaccc ctacttattc ttctcctaat tctgcttttt ggaccctgca
     1681 tccttaatag gctggtacag ttcatgaggg atagactttc agtcattcag accctcgtac
     1741 tgacgcagca gtaccatagg ctgagacaac aagagacaga aatttcttga ccaagtcgag
     1801 tgaaagattt cactcaaagt tagcaaaaaa aaaaaaaatg ggggaatgaa agaccccag
//
