LOCUS       XM_039100179            4665 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 420-like
            (LOC102552527), transcript variant X1, mRNA.
ACCESSION   XM_039100179
VERSION     XM_039100179.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100179.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4665
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4665
                     /gene="LOC102552527"
                     /note="zinc finger protein 420-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     14 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 100 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102552527"
                     /db_xref="RGD:7689541"
     CDS             2362..4248
                     /gene="LOC102552527"
                     /codon_start=1
                     /product="zinc finger protein 54-like isoform X1"
                     /protein_id="XP_038956107.1"
                     /db_xref="GeneID:102552527"
                     /db_xref="RGD:7689541"
                     /translation="MSQGMLAFRDVAVEFSQEEWGCLDSAQRALYIDVMLENYNNLVS
                     VENYCIHDTVHQHVNTEKESCQYNELGKILHEHFKCALYKTSITREASKNHRCCKVRD
                     ASVDSSNPDQHKSTYNGEEISKSKDCEKSLNLCSNIRQDQRLYTTKKEYRQKKYDDHF
                     SSTYSFMQQTNNYIGEKPYQCGKCGKCFSTSSNLTVHQRIHTGEKPYKCNLCDKSFSQ
                     STTLKTHQRLHTGEKPYKCRECGMSFPYLSSLKVHQNLHPGAKPYKCKECDKSFTIKS
                     TLIKHQRNHTGEKPYTCNVCDRSFRQCANLKTHQRLHTGEKPYKCKECGKSFTQSSSL
                     KKHQNLHTGKKPYKCEECDRSFTEKSTLTTHKRIHTGKKPYKCNSCGKSFNSCTNLKT
                     HQTLHTGEKPYKCKECGKSFPYMSSLKIHQNLHPGEKPYTCKECDKSFTLKSSLRTHQ
                     IIHTGEKPYKCNVCDKSFNQCTNLKTHQRLHTGEKPYKCKECGKSFHYWSSLKSHQSL
                     HTGEKPYKCKECDKSFTEKSTLIKHQRIHTGKKLYKCNICNKSFTWCASLKTHKKFHS
                     GEKPYKCRKCGKSFPQLSTLKRHQKIHEDKGHTGEKLYKCNDCDRSYIYHSSFRRHQK
                     IHSP"
ORIGIN      
        1 cagatggctg tgagccacca tgtggttgct gggatttgaa ctcaggacct ctggaagagc
       61 agacagtgct cttaaccact gagctatctc tccagccccc taaaatcctc tctttatcta
      121 ctgagcacag ttctgtggta gaaatccagg ggcattcaga agaatctcgt tctcatgtac
      181 acagctcact gatcactcac atctgctcac ctgtggagca ggacaagcgc cctagaatac
      241 agagagacag gagacagtag ctaagaatcc tggtatgttg gaggatgggt gaaggaatgg
      301 caaggggttc aggtaaaagt gggacatgaa atcagttttg ccacagtctg tttcagtaga
      361 aataatcctg gagacttcct ctgagaaaaa tctcagggtt atcctactgt agagatgaga
      421 agactttcta cagaagaact gatactcgga ggcaataaaa ttttacctga ctgtgcatgt
      481 gagtgatgcc atccttattc tatgcgcatc actgatcagg tctacacacc attattaaat
      541 agttttcatt tcagtgattt taatgtatta taaaatgatg aaaataactc taggtgtatt
      601 tatattgttt tgagattgag gggcttttgg tattctagca cattctctac attttggtgt
      661 taacttcccg attcctgaaa ataatacaaa cacaggtttg ataagaatca ggagctacat
      721 ttgcagacag gtaaacacta tcctatcttc ccagggacat ctcctattgc ctgttgtcac
      781 aacaattcca agtggtttcc attgctgtga ctgtaatata ctgtgagatc agctctaggt
      841 gtgatcctcc ttgtattttc ctgctctgtg ctgttccttg gtactttcag gatgactttc
      901 tgtaaaatat ccaaataaga ttttactgct ttccatagtc agggcgttta aaggaaattc
      961 cttattttac agtatcttga atctttggat atgaaatcag tttatagaag aaaatttata
     1021 ttttaaagtc attttctttt cttttttaag agctgtattc tgtttacatt atttgcttca
     1081 agaatattat ccatttacat tttaaatata ctaaaataaa tgaatttgtt attgtttagg
     1141 gtcttaagtg tggacacttt ctaggcggaa ttggaatgtc catacagtat cctatgccct
     1201 acaatgaaga agtttttaat atgtacatat tggccatttt aactgctgtt aagcattgtg
     1261 tgttcaactc agttgcttat ttattgatta tcttataatt ttcttccttg gtaatttttg
     1321 atagatcctg tgtttttatc aattatgtta taaatatata gctaagaagt acacctgttc
     1381 tcttaatact tttaattatt gctggtccca tggatttttg gattttcaaa actgacaata
     1441 tcaatgactt tcagaaatac tacatatttc ataacactgt gttccttttt aatttttgta
     1501 aaacacttat gtgctctagt tcacattttc ctcagttcct tcagcaattt ttcattttac
     1561 agaccttcac ttccttcaat cacattgtcc ttgtagagac ttttcatcta cctagtaaat
     1621 tcactcgagg attatgtctt gtttctttct atctatcttt tctattaatc tttttctttc
     1681 tttcctaatt tttatttaat attcagggtt tttatttatg tttacatatt atatatatat
     1741 gagtgttttc ttgcatgaat aactatatat cctttacatc ctagaattgt agttgggatc
     1801 cacagtgtgg gttttaggaa tgtatcttgg gtctctgcaa gaacaacagg tgctcttaac
     1861 cattaagcca tctctgactc actgtctatt aagttattta tttgagtagc aatagtacaa
     1921 aatagtataa aaccattctg ctcattttta tgtagatgat ggaaaaatct tctctttaca
     1981 taggcatgta ttatttcttt tttttttttt ttcggagctg gggactgaac ccagggcctt
     2041 gcgcttccta ggtaagcgct ctaccactga gctaaatccc cagcccccta aagattgtcc
     2101 ttgtattgtt gaagtgttga cttctgtgcg cacatatctg gttgcaatcc ttattctttt
     2161 tttttccccc ggagctgggg accgaaccca gggccttgcg cttcctaggc aagcgctcta
     2221 ccactgagct aaatccccaa caagtagtgc acgaagtcct tcgagccgga aacgaaccag
     2281 ggcagcaaac cagctatcca tccttactga agcaaataca aataaaagaa acagcaagaa
     2341 aaggctgatt ttcctggaaa tatgtctcag ggtatgttgg cattcagaga tgtggctgtg
     2401 gaattttccc aagaggagtg gggatgcctg gactctgctc agagggcttt gtacattgat
     2461 gtgatgttgg agaattacaa caacctggtc tctgtggaga actattgcat acatgatact
     2521 gttcatcaac atgtgaatac agaaaaagag tcttgtcagt ataatgagct tggcaaaatt
     2581 cttcatgaac acttcaaatg tgcactttat aaaactagta taactagaga agcctctaaa
     2641 aaccacagat gctgtaaggt cagggatgcc tccgttgact catcaaaccc agatcaacat
     2701 aaaagcacat acaatggaga agaaatttct aaatctaaag actgtgagaa atctttaaat
     2761 ttgtgttcca acattagaca agatcagaga ctctacacta caaagaaaga gtacagacaa
     2821 aaaaaatatg atgaccattt cagttctaca tacagtttca tgcaacaaac taataactac
     2881 attggagaga aaccatacca gtgtgggaaa tgtggaaaat gcttcagtac ctcctcaaat
     2941 ctcactgtac accagagaat tcataccgga gagaaaccgt acaagtgcaa cctttgtgac
     3001 aaatcttttt cccagagcac aactcttaaa acacatcaaa gacttcatac tggggaaaaa
     3061 ccttacaaat gcagagaatg tggaatgtca tttccttact tgtcatccct taaagttcat
     3121 cagaatttgc atcctggagc gaagccatac aaatgtaagg aatgtgacaa atcctttact
     3181 ataaagtcaa ctcttataaa acatcagaga aatcatactg gagagaaacc ttacacatgc
     3241 aatgtttgtg acagatcctt tagacaatgt gcaaatctta aaacacacca aagacttcat
     3301 acaggagaga aaccttacaa gtgcaaagaa tgtggaaagt catttactca gtcatcatcc
     3361 cttaaaaaac atcagaactt gcatacagga aaaaaacctt acaaatgtga ggaatgtgac
     3421 agatccttta ctgagaagtc aactcttaca acccataaaa gaattcatac tggaaagaaa
     3481 ccctacaagt gcaacagttg tggcaaatcc tttaacagtt gtacaaatct taaaacacat
     3541 caaacacttc atactgggga gaaaccttac aagtgcaaag aatgtggaaa gtcatttcct
     3601 tacatgtcat cccttaaaat ccatcagaat ttgcatcctg gagagaagcc ttatacatgt
     3661 aaggaatgtg acaaatcctt tactttgaag tcaagtctta gaacacatca gataattcat
     3721 actggagaga aaccctacaa gtgtaatgtt tgtgacaaat cctttaacca atgtacaaat
     3781 cttaaaaccc atcaaagact tcatactggg gagaagcctt ataaatgcaa agaatgtgga
     3841 aagtcatttc attactggtc atcccttaaa agccatcaga gtttgcatac tggagagaag
     3901 ccttacaaat gtaaggaatg tgacaaatcc tttactgaga agtcaactct tataaaacat
     3961 caaagaatac acacaggaaa gaagctctac aagtgcaaca tttgtaataa atccttcacc
     4021 tggtgtgcat ctcttaaaac acataaaaag tttcatagtg gggagaaacc ttacaaatgc
     4081 agaaaatgtg gaaagtcttt tcctcaatta tcaaccctta aaagacatca gaaaattcat
     4141 gaagacaagg gacatactgg ggagaagctt tacaaatgta atgactgtga cagatcctat
     4201 atctaccatt cgtcatttag aaggcatcag aaaattcatt ctccatagaa attatacaaa
     4261 tgcatggaat gtggtaagtc ctatattaaa ctgtcacaac ttaaaataca ttataaagtc
     4321 cagactggaa agaaaccata caaatgcatg gactttgaca aatcattaat cattcacatt
     4381 ttaaaagaca tcagagtatt cattctgaaa agagaggact ttacagatgc aaggcatgtg
     4441 ataaatcttt ttataatctc ttggagaaca tcataaaatt caaactggga agaaaaatac
     4501 caattgaaat aatgtgacag agcatttatc ttatattctc tgcttacaaa tcatattata
     4561 cataatgtaa acataatgat gtttgtgaaa tccttaaaat agtttatatc ataaaagagt
     4621 atcatagagt ttatatttaa ataaaattct gcaaatgtgt ctgaa
//
