LOCUS       XM_039101296            1310 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus actin-like (LOC102552318), transcript
            variant X1, mRNA.
ACCESSION   XM_039101296
VERSION     XM_039101296.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101296.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1310
                     /gene="LOC102552318"
                     /note="actin-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102552318"
                     /db_xref="RGD:7506405"
     CDS             16..1167
                     /gene="LOC102552318"
                     /codon_start=1
                     /product="actin isoform X1"
                     /protein_id="XP_038957224.1"
                     /db_xref="GeneID:102552318"
                     /db_xref="RGD:7506405"
                     /translation="MKSITLNIQTVSSPPVQACLPLARFPVGLAPALGSRSDSYVQDS
                     LLPFLQTLLERLEEEDWFIGAEVQNNRPKLNIHYPIFRGAITNWDNVQKVWHYSFYHY
                     LRIAPEQHPILVTDPPLTTKEARSKMTQILFETFNFPALYLANQGVLSLYASGRTSGT
                     TIESGDGMTYFVPIANGYPLHLSTTKVDTAGQDLTVYLMKLLSDNGNMLETTADLEHV
                     RDLKEKCCYVALDYDMEMSKTSESSFLKKFTLPDGKEISLGQETFMCPEVLFNPSLVG
                     KNYPGIDMQAQQSITSCDKSHWRNLFGYIILSGGTGTCSGLRFRLQREIAKLVSPELS
                     VKVVTSPYAKYGAWVGASILCSLPMFKDMWITNHEYLEIGPSVICRRTF"
ORIGIN      
        1 aaaagtcagt tcactatgaa gagcataaca ttgaacattc agactgtctc ctcccctcct
       61 gttcaggctt gccttccatt agccagattc cctgttggcc ttgccccagc cctgggcagc
      121 aggagtgact cctatgtaca ggatagtctg cttccttttc ttcagaccct gctagagagg
      181 ttggaagaag aagactggtt tattggagct gaggtccaga ataatcgacc aaagctgaac
      241 atacactacc ccatcttccg gggagctatc accaattggg acaatgtaca gaaggtttgg
      301 cattactcct tctaccacta ccttcgcatt gcccctgagc agcaccctat cttggtaaca
      361 gatccaccat taaccaccaa ggaagctaga tccaaaatga ctcagatcct atttgaaacc
      421 ttcaacttcc ccgccctgta cctggctaat caaggagtcc tctcccttta cgcttctggc
      481 agaacctctg gaacaactat tgaatctgga gacgggatga cctactttgt gcccatcgct
      541 aacggctatc ctttgcacct gtcaaccacc aaggtggaca cagctggcca agacctgact
      601 gtgtatctca tgaaactgct gtcagacaat gggaatatgt tagaaaccac agctgacctt
      661 gagcatgtcc gagacctgaa agaaaaatgc tgctatgtgg cgctagacta cgacatggag
      721 atgtcaaaaa cttcagaatc ctccttcctg aagaaattca cattaccaga tggcaaggaa
      781 atcagtctag ggcaggagac tttcatgtgc ccagaggtgc tcttcaaccc cagcctcgtg
      841 gggaaaaact acccagggat cgacatgcaa gcccagcaga gcatcacgtc ctgcgataaa
      901 tcccactgga ggaatctttt cggttatatc atactgtctg gtggtaccgg tacctgttca
      961 ggcctacgat tccggctgca gagagagata gcaaagctag tctctccaga gctttctgtg
     1021 aaggtagtta cctctccgta tgccaagtat ggtgcctggg taggcgcctc catcttgtgt
     1081 tccctcccta tgttcaagga catgtggatc acaaatcatg agtatttgga aattggccct
     1141 tctgtcatat gtagaagaac cttctaagtg gtggctttca ggttccatcg cctggcccaa
     1201 catcaccatg cccaggctga gcctcagcca tactgaccag ggcataatca agaaaagctc
     1261 atagcaaggc cccctttctc ccgaaggaca gtaaaagtgt gtgacaaggg
//
