LOCUS       XM_039106380            6167 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102552170
            (LOC102552170), transcript variant X1, mRNA.
ACCESSION   XM_039106380
VERSION     XM_039106380.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6167
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6167
                     /gene="LOC102552170"
                     /note="uncharacterized LOC102552170; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:102552170"
                     /db_xref="RGD:7606520"
     CDS             1687..3876
                     /gene="LOC102552170"
                     /codon_start=1
                     /product="endogenous retrovirus group K member 8 Gag
                     polyprotein-like"
                     /protein_id="XP_038962308.1"
                     /db_xref="GeneID:102552170"
                     /db_xref="RGD:7606520"
                     /translation="MRESLEQVRRTSVSLGMGQKLSKEAVFVKDLKASLRERGVRVKK
                     KDLVKFFIFISEVCPWFIIEGPDISPYSWEKVGRCLNDLLKEKGSEAIPIQTLSYWTL
                     IRDILKSSSGEKGRIISLAEDFIKPLSRQGSLSSVNPRGEETEIKNKEGSPCPSVTTD
                     IPTSAGASVALYPPLLLEDTPRLAFPVLQKPSFPPSKLTPSEESDLEEEASRYRNPDW
                     PPLVSATALLPYPPTFCAPVLPVPSVPVDLLLKTKDDLTKQVVALRDVLSLQKEFAKL
                     NSELSSLLKTIADTIFSYPPPRPIKTSGQRARHNSVTSKVQARETQSSDEESRSDREE
                     GEKTGGEGEEEVEKDSEEPRDLSQETVEFKRLKFKPLRQLNNAVRTYGPNAIFTQSML
                     EALSGGRYLTPGEWFRATQAVLSRGQFLSWKADFFDRCQTLAGRNQKDPRAPEAAWTF
                     DKLTGQGKYVSEGPQLRLPIGLLAQVKEAALGAWKSVPSKGTLTTPLTKVIQGPQEPF
                     SEFVARLQEVAERVLGPGEEDNNLLKQIAYENANSACKSVLKGQTKNKTLHDLVRLCA
                     DVDMFSHKVTQSISLAIRAALQVAKGPTSHKSCFKCGQPGHFARQCPLIQRTYQRKRD
                     SLDKIPALHLPGRLPATQCPRCKRGKHWANLCRSKTDISGNPLPPLQGNRWRGPPQGA
                     REPFTSSPPPGPLRYLPQDQTLPSLPQSYLRKRRSGLVCRRPYSIEA"
ORIGIN      
        1 gtgacaaggc agcttgttgg gcagagagca ggtctgcact ggatgagggg agcctgagat
       61 ctgtgtttga tcagccatct tgttatgcgt ctcagaccgt tagaggagca tccacctaaa
      121 ctgaagctcc atcctgcttt aaacagtgaa cagaacctgt gtggttttgg gttccagtaa
      181 taacagtgct gtactcccag cacttgggag gacagatcag gaggatcgag ttcagggcca
      241 gcccaggata cacgagaccc tgtatcctcc gtggaacggc tgagcacagt ggtgtactgt
      301 ggtcctaact actaaaggaa agaggtgcac ttgaatccaa gggttcaaga ccaactcagg
      361 caaactgaga aaagtgactc aaaataaaag gtgaagaagt atgtgtctga gctctcaagt
      421 ctgcctcaaa acagtgggaa ctgatgggaa tacaaggttt tctaactcca ctttctaggc
      481 cacggtgggc agctggcgag tgtgcgtttg cttcctcact gtttccaaca ctgaaggaaa
      541 gtgttgatat tccaggatac ttcatctagc tgtcttcgca accagtatat atcaaacaac
      601 acacagattg attaagtaca gagatttggt ttaataaatc atcttcaaaa gtagaaacaa
      661 attacagggc gggagtcagc tcaatagaag catgctcacc taatatgtgc agaggattta
      721 aacagcgaca ctggaaaaaa acgttaagcc gacttatagc catggagttt atccacatgt
      781 aagcacatag cttatagatc aaggcctgtt attattacag ttgttgttac tactgctatt
      841 aaaggaggag ggagagaaag gacagaagaa agaaaacgtt acactgtcaa ggcatctaac
      901 agagctaaca ggctatctgg gttctgagac aggctctctg tacccagtct ggcatgggac
      961 ttcctgtgta gcagatatta actctcaggt catactttgc aaaatggcta cagaagcgtt
     1021 actgagatgg tggagttcaa agaggtctta gtggggccag ggtcaagact gctgcagaca
     1081 ccaagcacaa aagggtcatt gcgggtgtga agaccgcctg gagagctgct ggaggcaagc
     1141 agtcctgcaa caggaagccc aagaccaggt ctggatatgt gaagagtaat tcagtaacta
     1201 agcaggttct gtcagacagc caggaccacg atgcgctgaa gctctgagga tcttctggaa
     1261 ctctctccta ttgattcttt ctgcactggg tgattggata acaggtcagc aagaccatca
     1321 cagatcacaa tggtctccag gtgacagtat gtgtcatgtg catgtgtgtg tgcacgcacg
     1381 tgttgctgtg tgtctacttc gagcccagca ttcatggacg ctggcctgtt tgtccaagca
     1441 gctatggtga ccccacatct accccaggtt tggatccccc tcggttcctg taaattatga
     1501 agcccctgtg ggcaggggca agtggcgcct gaacagggga cccgaggcac ggatcctctc
     1561 cagacagaag gcgattgtgt gaccccggct ggggaaccaa gcggacggac accgtagact
     1621 gactcgaatc ggaagtgaac acaccgtgtt gccactcgta gatcgcatcg cgagctcttg
     1681 tcactcatga gagaaagtct cgaacaggta agaaggactt ctgtctcatt aggaatgggc
     1741 caaaaactct ctaaggaagc ggtctttgtt aaagacttga aggcttccct cagggaaagg
     1801 ggagttagag ttaagaaaaa ggatcttgtt aaatttttta tttttatatc tgaagtttgt
     1861 ccttggttca ttattgaagg accagatatt agcccctata gctgggaaaa ggttggtaga
     1921 tgtttaaatg atctgttaaa agaaaaagga tctgaggcaa ttcctattca gacccttagt
     1981 tattggacac tcattagaga catacttaag tcctcctcag gagagaaggg aaggattatc
     2041 tctttagcag aggactttat caaacccctt tcgcggcagg gttccctttc ctctgttaat
     2101 ccccgaggag aagagacaga gataaagaat aaagaaggct ccccttgccc ctcggtcacc
     2161 acagatattc caacttcggc cggggcgtca gtggcccttt acccacccct gctgctggaa
     2221 gacaccccaa ggcttgcctt cccagtgcta caaaagcctt cctttcctcc cagtaaattg
     2281 acaccctctg aggaaagcga tcttgaagaa gaggccagtc gctatcgaaa ccctgactgg
     2341 cctcctctag tctcagctac ggcactactc ccttaccccc caaccttttg tgccccggtt
     2401 ctccctgtcc cttcagtccc tgttgacctt ttgctaaaaa ccaaagatga tttgactaaa
     2461 caggttgttg ctctgagaga cgttctatca ctacagaagg agtttgccaa actcaactca
     2521 gagctctcct ccctgctgaa aaccattgcc gatactatct tttcctatcc cccaccccgg
     2581 cctattaaga cttctggtca acgggccaga cacaattcag tgacctccaa ggtacaggcc
     2641 agagaaaccc agtcatctga tgaagaatcg agaagtgata gagaggaggg agaaaaaacc
     2701 gggggtgagg gagaagaaga agtagaaaag gatagtgagg aaccacgaga tctgtcacag
     2761 gaaacggtag aatttaaaag actcaaattt aagcccctta ggcaacttaa taatgctgtt
     2821 aggacctatg gccctaatgc catttttaca caatccatgc ttgaagccct ctcaggaggc
     2881 agatacctca ccccgggaga atggttcaga gcaactcagg cagttctctc tcgaggacag
     2941 tttttgtcat ggaaagctga cttttttgac cgctgccaga cgctagcagg aaggaatcag
     3001 aaagatcccc gggccccaga ggcagcttgg acctttgaca aacttactgg acaaggaaaa
     3061 tatgtgtcag agggccctca gctcaggcta cctataggcc tcttggctca agttaaagag
     3121 gccgccctgg gggcctggaa gtctgtcccc tcgaaaggga cccttacaac tccccttact
     3181 aaagtcatcc agggccctca agaaccattt agtgaatttg ttgctagatt gcaggaggtt
     3241 gcagaaaggg ttttgggtcc cggagaagag gacaataatc tccttaaaca aatagcttat
     3301 gaaaatgcta attcggcttg caagtccgtc cttaagggac aaacaaaaaa taaaacgctt
     3361 catgatttgg tcaggctttg cgccgatgtt gatatgtttt cgcataaggt cacccagagc
     3421 atcagtttgg ctatcagagc ggctctccaa gtagctaaag gcccaacctc ccataaaagt
     3481 tgttttaaat gtggtcagcc aggacatttt gctagacaat gcccattgat tcagaggacg
     3541 taccagagaa agagagactc tttggataag ataccggctc tccacctccc tggtcgcctg
     3601 ccggccacac aatgccctcg atgtaagaga ggaaaacatt gggctaatct atgtcgctcc
     3661 aaaacggaca tttctggtaa tcccctcccg ccccttcagg gaaacaggtg gaggggccct
     3721 cctcaggggg cccgagaacc gttcacttcc agcccacctc cagggcctct cagatacctg
     3781 ccccaggacc aaacactccc ctcccttcct cagagctacc tcaggaagcg caggagtgga
     3841 cttgtgtgcc gccgcccata cagtattgag gcctgaagac agcacacaaa ttgttcctac
     3901 cggaatgttt gccccccccc cccccgcctc ctaatacctt tttcctgatc atgggacaag
     3961 cctcgtcttc cctgcagggg gtcatcatac accccacggt ggtcaataat gactacacca
     4021 gagaaatgcg ggtactggct accaccacct ctggtcctat gaccttaaag gagggacaaa
     4081 ggattgccca ggctctcccc ctgccattag actggcgcta ctcgtctctc caggaccgcc
     4141 gtggtgctac ccaacctggc tcttcggatg ccttttgggt ccagacaatt acccatgaaa
     4201 ggccttctct taaacttaaa ctagacaagc gatggtttct gggcattgtt gatactgggg
     4261 ctgatgctac tgtcatatct aaagatcact ggccctcatc ttggcctctt cagccttcac
     4321 tcacacattt gcaagggatc ggccattggg cgacattaat tggctttgcc cttcttaaag
     4381 ctcatcaccg gacagcttaa gccccttttt gatatcctcc aaggcgactc tgatcccacc
     4441 tcacctcgtt gccttacgcc tgaggcctct gaggccctct ccttagtcga ggaggctatt
     4501 gctaaccaaa aaattgctta tcttttttcc cccatcatcc attacttttt atagtcctct
     4561 ccacacccct tgcccctact gcagttctct ggcaaggatg tcctctctat tgggtacatt
     4621 tgcctgcctc tcataacaag gtcctactga cctacccccc ttattggtgg cacagattat
     4681 acgtcttggg agagaacagt cacataaatt gtttggtaaa gatccagatg tcatgattct
     4741 tccctatagc ccatctcagg cctcctggct tggtcaacac atggacgaat gggcaatcag
     4801 ctgtgttgcc tttcagggta agatagataa tcattatcct ccagatagat taattcagtt
     4861 ttttggtaag ctttcagttc ttgttatttt cccaaaagtt attcgcactc gccccctgcc
     4921 cggggtccat cttgttttta ctgacagttc ctctaatggc caggccgcct tttccattaa
     4981 tggcaaggta catcaaatat ccgatccgca cagttggtag agctccgagc tgtccttgca
     5041 gtatttgaga ccctacccag atcacccttt aatttgtaca cagttagctc ttaccttgcc
     5101 ttttccattc ccttgctgga gacggttcct tatattcggc ccaccaccaa tgctgctcct
     5161 ttgtttgcca ctctacaaaa gcttattcat aagcgctctc acccctttta tgtgggacat
     5221 gtcagagcac attcaggcct gccgggcccc ctggccgagg gcaacgatgc cgtagatcac
     5281 atcacccaac ttgtagcctt ggcccaggag gcttctataa cccctttgac cctggcccaa
     5341 ggcacatgat ctacaccatc tcaatgcaca cacccttagg cttaagtata agatcacccg
     5401 tggacaggcc tgccagatag ttcgtaattg caaaggctgt gtaaccttgc tacctgaccc
     5461 tcatctggcg gtcaaccccc gtggattggt ccccggagag ctttggcaga tggatattac
     5521 ccatatctcc tcctttggaa agttaaaata tgttcatgtt actatagata cctttagtgg
     5581 ttttcttttt gcatccctgc aggcaggaga ggccacaaag catgttatca gccatgttct
     5641 ggcctgcttg gtggtgctcc cacaacctaa aattattaaa acagataatg gacctggata
     5701 tattatctct agttttaaac acctttgctc ccaatttggc attaaacata tcacaggcat
     5761 tccttataat cctcaggcac agggtatagt tgaaagagct catcaaaccc ttaaaaatat
     5821 gatccataaa ttatagtcaa atgggggaat attattcccc ctccccggta atcacaaaca
     5881 tttaataaat catgcactct ttgtccttaa ctaccttgtc atggacaagg atggaaaaac
     5941 tgcagcagac cgcctgtggc acccccataa ttcttatgat tatgcaccag tcctatggaa
     6001 ggacccgttg ttaacatccc aatggtatgg ccctgatctg gtcctcattt ggggacgtgg
     6061 atcagcctgc atttatgatt caaagactgg gagcgcacat tggctacccg agtgccttgt
     6121 taagaccttt aacccaccca gggaacaacc ctgaggaaaa gtctaac
//
