LOCUS       XM_056985479             645 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus immunoglobulin kappa chain variable
            8-30 like 1 (Igkv8-30l1), mRNA.
ACCESSION   XM_056985479
VERSION     XM_056985479.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086022) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..645
                     /gene="Igkv8-30l1"
                     /note="immunoglobulin kappa chain variable 8-30 like 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 4 long SRA reads, 223 Proteins"
                     /db_xref="GeneID:102551491"
                     /db_xref="RGD:11052049"
     CDS             7..558
                     /gene="Igkv8-30l1"
                     /codon_start=1
                     /product="immunoglobulin kappa variable 4-1"
                     /protein_id="XP_056841459.1"
                     /db_xref="GeneID:102551491"
                     /db_xref="RGD:11052049"
                     /translation="MASSSPVQLLRIYKPGLFIVTKLYQTGRRSKMESQTQVLMSLLL
                     WVSGTCGDIVMTQTPSSQAVSAGEKVTMSCKSSQSLLYSENKKNYLAWYQQKPGQSPK
                     LLISWASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLAVYYCEQYYDTPPTVLQPPT
                     QTSLMVSTAVYTIHSPGIHSSPF"
     polyA_site      645
                     /gene="Igkv8-30l1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ctttgcatgg cttcctccag cccagtccag ctgctcagaa tttataaacc aggtcttttt
       61 attgtgacta aactgtatca aacaggcagg aggagcaaga tggaatcaca gacacaggtc
      121 ctcatgtccc tgctgctctg ggtatctggt acctgtgggg acattgtgat gacccagact
      181 ccatcctccc aggctgtgtc agcaggggag aaggtcacta tgagctgcaa gtccagtcag
      241 agtcttttat acagtgaaaa caaaaagaac tacttggcct ggtaccagca gaaaccaggg
      301 cagtctccta aactgctgat ctcctgggca tccactaggg aatctggggt ccctgatcgc
      361 ttcataggca gtggatctgg gacagatttc actctgacca tcagcagtgt gcaggcagaa
      421 gacctggctg tttattactg tgagcagtat tatgatactc ctcccacagt gcttcagcct
      481 cctacacaaa cctccttgat ggtttcaaca gctgtgtaca ccatccatag ccctggcata
      541 cacagttccc ccttctgaga gctggcatgc taacagtaaa aaataatgtg tttacttcct
      601 cttttgtctt ttggtataaa atctatgcaa caaaatggag aataa
//
