LOCUS       XM_039097379            3967 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102551486
            (LOC102551486), mRNA.
ACCESSION   XM_039097379
VERSION     XM_039097379.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097379.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 22% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3967
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3967
                     /gene="LOC102551486"
                     /note="uncharacterized LOC102551486; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 1 EST, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:102551486"
                     /db_xref="RGD:7733249"
     CDS             1..984
                     /gene="LOC102551486"
                     /codon_start=1
                     /product="translation initiation factor IF-2"
                     /protein_id="XP_038953307.1"
                     /db_xref="GeneID:102551486"
                     /db_xref="RGD:7733249"
                     /translation="MWREAGRSGSVEAKATGQAGGALRCGARPARCSVSGSPHLGRCP
                     RGESPRSGPGPSGVRSAGLCLRERCQGPRSGALAGARPAPHSAPGPRAQRRPREPRAG
                     QGGVPASGECTRVPFAAAARCPAGQGNRIPAARPEGEAAPPPHGPRTTRRMRAAGAQR
                     TKETDDRHAAISDCGHPRGQSRQPCAPRDPCRLRPPVHNSPGGAARGEEEPRALAPGA
                     PRILIGPVTPRQHPPPRPAHPVTIPGGPDTKQVLGPQHGMRCAPGMTFVGNKDLMEKD
                     EGDTFLSWIYGLSMRCGPVCIRYALTSLLIEGVVTHAFDLGTPEAEEMLQV"
ORIGIN      
        1 atgtggaggg aggcagggag atccggctcc gtggaggcca aagccacggg ccaggctgga
       61 ggagctctgc gatgcggagc gcggcccgcg cgctgcagcg tgtcggggtc cccgcacctg
      121 gggcggtgtc caagaggcga gtccccgcga tcgggacccg ggccgagtgg cgtgcgctct
      181 gcaggcctgt gcctccgcga gcgctgccag gggccgcgga gcggggcgct cgccggtgcg
      241 cggcctgcac ctcattccgc gccgggcccc agagcgcagc ggcggcctcg ggagccgaga
      301 gcaggccagg gcggcgtccc ggccagcggc gagtgcaccc gggttccgtt tgcagccgcc
      361 gcccgctgcc cagccggcca aggcaaccgc attcccgccg cccggcccga gggagaggcg
      421 gcgccgcccc cgcacggacc ccggactacc cggcggatgc gcgcggccgg ggcccagagg
      481 acgaaggaaa cagatgacag acacgcggcg atctcggact gcggacaccc acgaggacaa
      541 tcccggcagc cctgtgcgcc ccgagacccc tgcaggctcc gcccgcccgt gcacaactcg
      601 ccaggcggcg ctgcgcgggg agaagaggaa ccaagagccc tagcccctgg agcgccgcgg
      661 atcctgattg gtcctgttac tccgcgccag catcccccac ctcgccccgc ccacccggtc
      721 accatccctg gtggaccaga cactaagcaa gtactgggtc ctcagcatgg gatgcgctgt
      781 gcaccaggga tgacgtttgt gggaaacaag gaccttatgg agaaggatga aggagacaca
      841 tttctctcgt ggatttatgg actgtcgatg cgatgtgggc ctgtgtgtat ccgttatgcc
      901 ttgaccagcc ttctcattga aggtgtggtg acacatgcct ttgatctcgg cactccggag
      961 gcagaggaaa tgctacaagt ttgagaccag caaatatcca gcccgccaag ctaacctaac
     1021 aagatcctat ttcttcaaag aaaagaggcc ttctgtcgct catctaacac gagacagttc
     1081 tcgcgtatca ctggaacacc ctgtcagatt ttcaaggatt cagatgactt acttgcacgt
     1141 catttcacga caccccgttg gcgagcgtta taggacattt ggggataagg aaacaggagc
     1201 tagacagaga ttacacccat tcgcgccgac acgcccagct gaagaatgaa gatagaagga
     1261 tcaaagtgtt gcactggccc acagaaagca aagcccatcg tcctccctgg gaaggggtgg
     1321 tcttagacac ccaggttgaa taaaaagcct gcctttgctc ctctgaggct ataaatacgt
     1381 ggggcttgtg cagcccaaaa agactgagtg aagtccccct gcccacacac atatgcatgt
     1441 ggataaaata aggacatgac ctctccaaga caaggttgcc aaggagggtt ttattgttac
     1501 ttattgcaat ggaagcatac accgtggctt cgtgctgatg gcgtcatctg ccgcaatgga
     1561 ggcaaagcgc atccttgcta tttaaaaacg tgttttccta agcaaaagtt gtgtatataa
     1621 taagggatgg gttgtacctg taaggctggt acagagtcag acagtcctct gtgggggagt
     1681 gaggctgatt atagggaaga tgaaaaaacg atgcaagcca ctgatgggag ggctgcgggt
     1741 catcaccaca ccaaacccga gtgtagttct cacagccgtc ttatactaca gtaccatggg
     1801 aagcaaagcc acaggccaac aggaacagtt ttgctgaact acataaaaga catttgctct
     1861 caccccaaaa attccctgtt caaaaggacg ccaaggtcaa tagaatcttc agtccctcac
     1921 cctgagcctc aagcatacct cctcttatgg gtccatgcct tagcaggccg ggaaatctgc
     1981 cgacagaccc tgccctgcct cgactctgcc tggcagacag tctcctttcc tccctccctc
     2041 cctccctccc tccctctccc tctctttctt tctctctctg ttttttcatg cttcagagaa
     2101 gtggcaaacg gctcctggct atagattatt tctccaccag tgaaatgagc caattcaagc
     2161 cagattagaa tatcttaaag gcagatgcgt tgggaagctg ctctgagagt gccaccactg
     2221 cctggctctc ttcttgaggt aaaaggcctc tttcataaca catgaccttc catctattag
     2281 cagttctcac cctgtgggtc tcgaccccct tcacaggggt tgttgagaac catcagaaaa
     2341 cgtagatatt tgcattacaa ttcataaccg ttatgaagta gcaatgaaac taatgttatg
     2401 gttgaggtca ccaccacatg agggacgact gcttcaggaa gggtgggaac cactggccta
     2461 aatcttctat ctgaggcatt cacctgtgag tataacactt gtgttgctag tgtgctctgg
     2521 ttgagagaag acacattgtt tatttgtttt gttgttgctg ttattgttgg tggtgctggt
     2581 tactgacagg cttctctctt ttggtgcaaa tacaggccag attaaaagta gataaagtcg
     2641 gggttgggaa tttagctcag tggtagagcg cttgcctagc aagcgcaagg ccctgggttc
     2701 ggtccccagc tccgaaaaga agaaaaaaaa aaaagtagat aaagtcaggt ttactaggaa
     2761 gcagctctcc ggtgggttcc tgatctcaca ggtggaggtc agtgaagtcg cacatccggg
     2821 gtaaagcaag ggggttttac agagcttagg tgaggagtga ggatgtgctg gctaggagct
     2881 gggaaggtgt tcatacatgg tcagaacctg agcccctggg tggatactat tgggcgggtt
     2941 gctggaaatt agagagatga ggagtgataa tgtattcgtc tggagttttc tccaagtggg
     3001 aggcagagtt ttctttgtgg ggatgggttg tggggaagga gggcagagat ggggctccct
     3061 agcttgtttg gggtcggggg aatgagcagg ggttccagac tagcagttag ggtttcattg
     3121 cacagccaca ggaaggacaa tgttactgta aacgggaata agttactata aaaggcaaga
     3181 acattagata tgtcacaggt acctaaaaga aagaaacaaa gcccttttgc ctacaaagtc
     3241 agagtaacac caggtaacca cggccagtga gccttggcca gatgacacac atctcgcaac
     3301 actaagcaaa taggtaatat aatatagcaa gtcgaaaatg cagtaatttt tcctttttcc
     3361 atttttcttg tgtgtatgtg tacatatgta tgtggatatc cattcaggtg tgtggatgaa
     3421 catgtatgga gatcagagct tgatattaaa gcatgtatgg agacttcaac gatcatcctc
     3481 aggctaggtt catttataaa gagcactgtt tgctcttcca caggacccgg gtttcactcc
     3541 cagaacccac gtggcagctc acaactgcag ctccagagga tccaacaccc tcttccagcc
     3601 tcgggaggca tcaggcatgc aagtgagtag acagacacac atacatacag gcaaaacagc
     3661 cctgttcata aaaatagtgg aaggagaaga cgtgacccag acaagcagat tgacacctga
     3721 gagttcgtgg acctgtgtgt gctgtgaaaa tgctccaaga ccaaaagcat cactggagac
     3781 aaggaccaca tgtccgtcca gatgaatgtg actgaggctg acaaggtcac aggcagtttt
     3841 aatgaagaat ggctcggtca gtcagacaat tctattctca gcttggctaa ggctgacact
     3901 gttgtctcaa agtgaaggtg ggaaaatatt tgtcataaac aaataagaaa gaaaaaaaag
     3961 aaaaaaa
//
