LOCUS       XM_017602213            1028 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus putative protein SSX6-like
            (LOC102551397), transcript variant X1, mRNA.
ACCESSION   XM_017602213
VERSION     XM_017602213.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017602213.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017602213.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1028
                     /gene="LOC102551397"
                     /note="putative protein SSX6-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102551397"
                     /db_xref="RGD:7498221"
     CDS             169..549
                     /gene="LOC102551397"
                     /codon_start=1
                     /product="protein SSXA1-like"
                     /protein_id="XP_017457702.1"
                     /db_xref="GeneID:102551397"
                     /db_xref="RGD:7498221"
                     /translation="MNTDSSCTKSPGDILKPEKMSKSFKDISKYFSEEEWAKLTKWQK
                     SAYIFMKRNYIRMTDLGVMVNQPVFMRGKDQITESLMKESDEGCGHENEGEHSKQIFD
                     MEHTKGLKDPSGVMRVPENKDFRK"
ORIGIN      
        1 ttcaagggta ctgactattc tggtttcttg attcttgagg ggcagctgaa tcaagaaact
       61 tgatctcttt ctgaagaaac accccctctt ctttgtgtgt gaggacattt ggtttgtgct
      121 tggagacagt cagttcatga tcttcaacag gacactttcc acaaagtcat gaacacagac
      181 agttcctgta caaagagccc tggtgatatt ttgaaaccag agaagatgtc caagtcattc
      241 aaggatattt ccaaatactt ctctgaggaa gaatgggcaa agctgaccaa atggcagaaa
      301 agtgcctaca tatttatgaa aagaaactac atcagaatga cagacctagg tgtcatggtc
      361 aaccaaccag tattcatgcg tggaaaggat cagatcacag aatccttaat gaaggaatct
      421 gatgaaggtt gtggccatga aaatgaaggt gaacactcta agcagatatt tgacatggag
      481 catactaaag gcctgaagga cccaagtgga gtcatgagag tgccagaaaa caaagatttc
      541 agaaaataaa acatatccta atgtttgatg tatgcagtgt taatgaagaa aatcactacc
      601 atggaaaagc ttgtgagaag aatttgatga tcattcagaa tcacggaaac aactctggta
      661 tcctaaatat caaatgaaag gaaaatttcc cacagtgaag agttagtgtc agtagtttta
      721 ctctgtgcca gacaccctct gaagcctctt cattctctgt ttgtttgtct gtttatctgt
      781 ctgtgtgttt aggggttttg gtaagattca tttgtattat catttagagg aatgcttgtg
      841 gttgcctgtg caagtacatg acacctagat ttaagtgcct gttgacatca gaagaaggca
      901 ttgcatttcc tggagatgga gttagggaca gttttgagct gcccaatgtg tgtgctgaga
      961 accagtttag atcctttgaa aaataagcaa gtacttttca ctgttgaggc atttctgtag
     1021 ccaccaaa
//
