LOCUS       XM_039101522            2636 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus afadin-like (LOC102551311), transcript
            variant X1, mRNA.
ACCESSION   XM_039101522
VERSION     XM_039101522.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2636
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2636
                     /gene="LOC102551311"
                     /note="afadin-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:102551311"
                     /db_xref="RGD:7695090"
     CDS             1310..1636
                     /gene="LOC102551311"
                     /codon_start=1
                     /product="afadin-like isoform X1"
                     /protein_id="XP_038957450.1"
                     /db_xref="GeneID:102551311"
                     /db_xref="RGD:7695090"
                     /translation="MKKVGQLGAHDQVLIVDGFSLFGHSQERAAELMTSTSPMVTLEV
                     ANQGILFHCLSTFLTQPLSSMVQRGVDPKALRTSSGTMCFPRITCTCLHTPILCSENF
                     SKPIHL"
ORIGIN      
        1 cacctgcaca gctctcacaa tggatgtggc tagtttcagg tgtgtgagga agtcagatgc
       61 tagtcacgag acttagctgc agtcccaggc gccatcttgg gactaccgcc acacccgctc
      121 cccacaggta actgtgattt caaggtcatt tccaatcatc tatgttaagt gttttgactc
      181 aaggaaactg gcattgccat agatgaaatc agtaaaaggc atatttattt cttctttgcc
      241 acataactag acaaatgtca gttcaaaaag ttgcgatcat ttagtgtact tttttcatct
      301 cagttactta tgtatttttt catttattta aatttccata catgtataca gtaaaatatg
      361 gtcatatcca ccctaacatc tgtcctccaa cttctacaag atccctctca gaatcccccg
      421 attgactcta tagccctggt tggtctggga cttgctgtgt aaatcaaatt agcctagaac
      481 tcacagaggt ccacctgaat ctgatcctgg gcttaaaagt cagcaccact aaaccattcc
      541 tctgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtacagaaa
      601 tacacataca cacatttttt gtatcccagt aagccctatt agtgctagtc atacatgcat
      661 actgtgtgta cagacattca ctggattatc agagtcctac cagtggcttg tccccaagga
      721 agagtgaatt tctatcagct gttgttaact gcagctcctc atttgatgca agggcttata
      781 agttcttctc ccacccatgc acgatgtgca aacaaatgac acagccacct ccgtcacttt
      841 actcggttaa catatactaa taaaatgtta tggtattttc aaatttatat gtatctgtat
      901 tgtatatgta taatgacaca ttgtatatac ttgtaatggc tattcttggt tgtgaacttg
      961 actatatgtg gaatgaactt caatccagaa ttggaaagct cacctttgat cctgatttga
     1021 ggctgggaga cacaaatttc tgaactgaat cttggcatgg agatcatgag gcaaagtggc
     1081 tgtgaatctc aggagtttaa gacaaggaga tctctgagtt caaggtcacc taggacaaag
     1141 caagtcccag ttccagctgt ggtggtacac acctttaatc tgggacacac cttctgctgg
     1201 agatttatat aaggacattg gaagaaggaa gagtctctct ttcatctgcc tgcctgattt
     1261 gtaggaccct actccctact gcaggggaga aaatggacca ttctcatcaa tgaaaaaggt
     1321 tggacaacta ggtgcccatg accaagtcct cattgtggat ggatttagtc tatttggaca
     1381 ttctcaggaa agggcagcag aactcatgac tagtaccagt cccatggtta ccctggaagt
     1441 tgcaaatcaa ggcatcctct ttcactgcct gtccaccttt cttacccagc cattgtcctc
     1501 catggtgcag agaggagtgg atccaaaagc tctcagaacc tcctcaggaa ctatgtgttt
     1561 cccaaggatt acctgcactt gcttacacac ccctatcctg tgttctgaaa acttttcaaa
     1621 gcccattcat ctgtgactgg tgagttcagg acagtagtcc caagtgtctt ttcctaccct
     1681 gacagttcac tctcatgagg catcacctgc ccttgacaga ggattttccc aaggggcatt
     1741 ggatgtgcag gagaattgtg tgtcctgagt cttttcagag cagcacagga ggacatcaag
     1801 gtcccatttg cttttggttt ttgaactcat gggcctggca cggtcttgtt ggtatttagg
     1861 tccctgtcag tcctgaattg aattttagca tgggaaccca gggcagttgt cttcaaactt
     1921 tttcctagca tggaccacat cttcacctca acagacataa agcaggacaa acaccaggca
     1981 ggcagaaaac cctcagaggc tggaactggc atgttcaaac actctggctt gaccttggcc
     2041 aacacaggtt cagagaacag cctctatgta ggaagatctc cttcctcctc tcagagttta
     2101 cgacatgtag acttaagcta agctgctggc acacatgtga gcagaggcac cagcctaggc
     2161 ttgttcaata tcaaagccta cctgccaccc ctgtatcata gtcatagcag cacatctcat
     2221 gagaattcta ggggtggtga tattctgggt gaatattctg tattctgctg ccagtttctt
     2281 tgcttccaca tgtccaactg tgagaaggga ttgagaaagg gaaggtgatg aagtcctgct
     2341 aatatctact tggtgccacc aaagacaatg tggtcttgct ggcaagatat ttgcattaga
     2401 ttttataaaa agtgacctca ggacagtagg tactctcagg aaggtgcagc atggtgggta
     2461 caatggaaca ggatccctga ggttggttca gtgggccagg gtccctgggg gaggagcaat
     2521 ggggcaagag cccttgggat gggatcttgt agtagtgacc ctgtggaatg ggcaactgac
     2581 agggaccctg gggcaggtgc actgtgatgt gcacccaagc tggaatgttc agacag
//
