LOCUS       XM_039108953            2877 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cadherin EGF LAG seven-pass G-type
            receptor 2-like (LOC102551166), mRNA.
ACCESSION   XM_039108953
VERSION     XM_039108953.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2877
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2877
                     /gene="LOC102551166"
                     /note="cadherin EGF LAG seven-pass G-type receptor 2-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 36% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102551166"
                     /db_xref="RGD:7747752"
     CDS             1..2877
                     /gene="LOC102551166"
                     /codon_start=1
                     /product="cadherin-related family member 3-like"
                     /protein_id="XP_038964881.1"
                     /db_xref="GeneID:102551166"
                     /db_xref="RGD:7747752"
                     /translation="MSNFKILLICTAVSYIGAEIQMLINPVNLPENQLPGTELSRAYD
                     KDVAGRPNAYRFLNKTKYFVIDANSGIITSTKIFNYETDPTRFLLIVDTGGDMRHVLT
                     IYINDVPEPPDCNIDPLFSSGSATFEIAEDHPLFQPIYKVSAADEDTAHGDRLTYNIE
                     TELSGPKRGANSFGVDPVNGIVSLRGEDVLDFDAGYHTFQLSVRVTDTEGLFCQGTII
                     INIRNINDETPQFEPFPMDSINVTEKKPIGDFVTRVKATDRDEDSSITYSFKTQQEMF
                     GLDPITGIITLLQPLNLDNPSNSRIYHLEVEARDDGNNTSSYMFTVFVDNADDPISCD
                     PSFSTGPGVSVSVAENIPSSAFIYAILSRDPDLGQEVELFQFVIAVRNRDSLSLESCV
                     GTITINIQNVNDESPVLIYRPEAPININENLPIGTKLAKFTATDRDIADTVYYEFIGT
                     QKEFAINEDSGEVTVAYPLDYEDDTIPKSWVLYVRVYDNDRTHSTTGTLTVILQDVND
                     NPPQCSQEIYVIELPENIPVGTSLVSLSCTDQDGTIPNNNITYQLIKDTFSNKTFTLT
                     KSELKIGPMHLDYDSTTFAGMDFKHTLFIRVSDEGFPVLSTIIRIILRVSRINEHNPI
                     GSMMTFMFSIFENSPVDSPVGKITYTDEDWPRSNIHYTIVGGNFGIPPKFYIESDTGM
                     IKLLNSLDREAASQYKIAVRVTDMGNDALPDPLRQRSATAQVTIHVLNVNDEPPVCTP
                     PHVETQIFATFRGPIVRLRCSDKDSPQDHLSYSIIEGNKNNQFTLWREGVESPLLATR
                     QDFQYDLLEGAQDVLTFQLLIEVTDELGGNAASQLTSTTTVIIHVLPWTTTRPTSSMK
                     TTTTTPITTSVLRKISYYWRPDSWFPVVLTLAGVLLVMCLYAVSWCLCKDVPACSRLF
                     PHYHRHQPSLTEKDAIQLPSDRNVVSTEQPDKGMRRKLFQWKTF"
ORIGIN      
        1 atgagtaact tcaagatttt gttaatatgc acagcggttt cctatatcgg agcagaaatt
       61 cagatgttaa tcaaccccgt taatttgcct gagaatcagc ttcctggaac agaactaagc
      121 cgagcttatg acaaagatgt ggctgggaga ccaaacgcct accgctttct gaataaaacg
      181 aagtattttg tcatcgatgc aaattctggc atcatcacat ctacaaaaat ctttaattat
      241 gaaacagatc caaccaggtt tctacttata gttgatactg gaggagacat gagacacgtt
      301 ttgaccattt atataaatga tgtcccggaa cctccagact gtaatattga cccgcttttt
      361 tcttcaggct cagctacatt tgaaattgct gaggaccatc cgctctttca acctatttat
      421 aaagtgagcg cagcagatga agacactgcc catggtgaca ggctgacata caacatcgag
      481 acagagttat ctgggccaaa gaggggagca aactcctttg gagtagatcc tgtaaatggt
      541 attgttagct taagaggtga agatgtcttg gactttgatg ctggatatca cactttccag
      601 ctgtcagtga gagtgacaga tacagaaggt ttgttctgtc aagggacaat aattatcaat
      661 attagaaaca taaatgatga gacacctcaa tttgagccat ttcctatgga ttcgattaat
      721 gtgactgaga agaaacccat tggtgatttt gtcacaaggg taaaagccac agaccgtgat
      781 gaagatagca gcatcacgta ttcctttaag acccagcagg aaatgtttgg tttagaccca
      841 atcacaggta taatcactct tcttcaacct ttgaatcttg acaatccaag taactccaga
      901 atctaccatt tggaagttga agcccgagat gatggtaaca acaccagctc gtatatgttc
      961 acagtttttg tggacaacgc tgatgatcct atttcctgtg atccaagttt ttcaacaggc
     1021 ccgggtgttt cagtgtctgt tgccgaaaat atcccctcat ccgctttcat atatgcaata
     1081 ctttcaagag atccagatct gggacaagag gttgaacttt tccagtttgt aatcgctgtg
     1141 agaaataggg acagcctgtc tctggagtca tgtgttggca ccatcactat aaacatccaa
     1201 aatgttaatg atgagagtcc tgttctgata tacagaccgg aggctcctat aaatattaat
     1261 gaaaatctgc ctattggaac aaagctggcc aagttcacgg caacagatag agatatagcg
     1321 gatacagtat attatgaatt cataggtaca cagaaagagt ttgctataaa tgaagactct
     1381 ggagaagtca ctgttgccta tccactagac tatgaagatg acacaatccc aaaatcctgg
     1441 gtattatatg ttagagttta cgacaatgat cgaacacatt caacaactgg gacactcaca
     1501 gtgattcttc aggatgtaaa tgataaccct ccacaatgct ctcaggaaat ttatgtaatt
     1561 gaacttcctg agaacatccc agttggcacc tctttagtct ccctaagttg tacagatcag
     1621 gatggaacta ttccgaacaa caatataact tatcagttga ttaaagacac tttttcaaac
     1681 aaaaccttta ctcttacaaa gagtgaacta aaaatcggac ctatgcatct agattatgat
     1741 agtacaactt ttgcaggaat ggactttaag cacacattgt ttataagagt gtctgatgaa
     1801 ggttttcctg tactctcaac catcattaga atcatattaa gagtgagccg tataaatgaa
     1861 cacaatccta ttgggtctat gatgacattt atgttcagta tatttgaaaa cagtccagtt
     1921 gattcgccag ttggaaaaat tacctataca gatgaagact ggccacgtag caatatacac
     1981 tataccatcg ttgggggcaa ctttggaata cctccaaaat tttacatcga atcagataca
     2041 gggatgataa agctgttgaa ttcactggac agggaagcag cttctcagta taagatagct
     2101 gtgagagtca cagacatggg gaatgatgcc ctccctgacc ctctcaggca gagaagtgct
     2161 actgctcagg tgaccatcca cgttctgaat gtaaatgacg agcctccagt atgcacaccg
     2221 ccacacgtag agactcagat tttcgccacc tttaggggtc ctatcgttcg cctcaggtgt
     2281 tcagacaagg actctccaca ggatcatcta agctattcaa tcatagaagg aaacaaaaac
     2341 aatcagttca cactttggag agaaggggtt gagtctccac ttctggccac caggcaagat
     2401 ttccagtatg atctattaga aggagctcaa gatgtattga ctttccagtt acttattgaa
     2461 gtcaccgacg aactaggcgg gaatgcagct agtcagctga catccaccac tacagtcata
     2521 attcatgtgc ttccctggac tacaacacgg ccaacttctt ccatgaaaac aactactaca
     2581 actcctatta ctacctctgt cctaaggaag atctcatatt actggagacc tgacagctgg
     2641 tttccagtgg tgctcacgct tgcaggagtt cttctcgtga tgtgtcttta cgcagtttca
     2701 tggtgcctct gcaaagatgt tcctgcctgc tcaagactat ttcctcacta tcacagacat
     2761 caaccaagtc tcactgaaaa ggatgctata cagttaccaa gtgacagaaa tgtagtatct
     2821 actgaacagc cagacaaggg gatgagaaga aaattatttc aatggaagac attttga
//
