LOCUS       XM_039096390            1172 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus isopentenyl-diphosphate
            delta-isomerase 2-like (LOC102550988), mRNA.
ACCESSION   XM_039096390
VERSION     XM_039096390.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096390.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1172
                     /gene="LOC102550988"
                     /note="isopentenyl-diphosphate delta-isomerase 2-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins, and 77% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102550988"
                     /db_xref="RGD:7740538"
     CDS             29..712
                     /gene="LOC102550988"
                     /codon_start=1
                     /product="isopentenyl-diphosphate delta-isomerase 2-like"
                     /protein_id="XP_038952318.1"
                     /db_xref="GeneID:102550988"
                     /db_xref="RGD:7740538"
                     /translation="MSDVTVDWIDKHQLQRLDEMLIIVDENDKVIGADTKRNCHQNKN
                     IEKGLLHRAFSVALFNSEKKVLIQRRADTKLTFPGYFSDSCSSHPLSNPEEMEEKDAL
                     GVKRAALRRLQAELGIAQDQVSLEDIVFMTRYHYKAKSDAVWGEHEVCYLLLIKKDVK
                     ICADPSEVSSFSYLTREELEELLERGARGEVQVTPWLRFVVEQFLYAWWPYLDEATKF
                     IELDKIYRV"
ORIGIN      
        1 tacacaggtc ggatcacagc tagcagacat gtctgatgtc actgttgact ggatcgataa
       61 acaccagctg cagcgtttag acgagatgct gattattgtt gatgaaaacg ataaggtcat
      121 tggtgcagac actaagagga actgccatca gaataaaaac attgagaaag ggctgctgca
      181 ccgagccttc agtgttgctt tgttcaactc agagaagaaa gttctgattc agcgccgagc
      241 agacacgaag cttaccttcc ctgggtactt tagtgattcc tgttctagtc atccactgag
      301 taatcctgaa gaaatggagg agaaggacgc cttgggagtg aagagggcag ccctgagacg
      361 gctgcaggct gagctgggca tcgcccagga ccaggtttct ctagaggaca tcgtgtttat
      421 gacaaggtat cattataagg caaaatctga tgcagtctgg ggagaacacg aagtttgtta
      481 ccttctgctt atcaagaaag acgtcaagat ctgtgcagat ccgagtgaag tcagtagctt
      541 cagctacctg actcgagagg aactggaaga gctcctagaa aggggggccc ggggtgaagt
      601 ccaagtcacc ccctggctga gattcgtcgt ggagcagttc ctgtatgcat ggtggcctta
      661 cttagatgaa gcgaccaagt tcatagagct tgacaagata tacagagtat gaggaacagg
      721 aaatcagaca ctggctgtga ggatgcccca gtccagcact gagctcaggg cagacccaca
      781 gctcagatgt tagctatgca cccggaccaa aacagggaaa ggactcttct tttccagaaa
      841 gccaaaaatc attatcatta tctctgaatc ttcttttctt ttctttcttg acacagagct
      901 atgtatccca gaccagcctc aaacttctcg tgtagccaag gatgactttg aatttctgat
      961 cctcctgcct agacttcctc tggcccttgg attccaggca cacaccagca tgcctgctcg
     1021 gtgctggagg ctgaacctgc agcttcacgt acagcgcgca aacatgctac caacaaccaa
     1081 tcccatcccg tggtttcttg cctttttccc cccagttgct tcatttcttt attttcaact
     1141 gcctcggtgt gagaaagaaa tgcattgttt tc
//
