LOCUS       XM_039093935            2209 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein SSX1-like (LOC102550885),
            transcript variant X1, mRNA.
ACCESSION   XM_039093935
VERSION     XM_039093935.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2209
                     /gene="LOC102550885"
                     /note="protein SSX1-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102550885"
                     /db_xref="RGD:7555795"
     CDS             172..705
                     /gene="LOC102550885"
                     /codon_start=1
                     /product="protein SSX1-like isoform X1"
                     /protein_id="XP_038949863.1"
                     /db_xref="GeneID:102550885"
                     /db_xref="RGD:7555795"
                     /translation="MNTDSSCTKSPGDVFKQEMMSKSFKDISKYFSEEEWAKLTKWQK
                     SAYMFMKRNYIRMTDLGVMVNQPVFMRRKDQITESLMKESDEGEHYKQIFGMEHTKGL
                     KMWLSGQRALLLSSCAFRNAVIHFHVINRTTQVSHSQELGSISLSDAKSLLPTALVAQ
                     HFHVGWVALHSIWCHLP"
ORIGIN      
        1 gagacattca agggtactga ctattttggt ttgctgattc ttgagtggca gctgaatcaa
       61 gaaacttgat ctctttctga agaaacccct cttctttgtg tgtgaggaca tttggtttgt
      121 gcttggagac agtcagttca tggtcttcaa catgacactt tccccaaagt catgaacaca
      181 gacagttcct gtacaaagag ccctggtgat gtttttaaac aagagatgat gtccaagtcc
      241 ttcaaggata tttccaaata cttctctgag gaagaatggg caaagctgac caaatggcag
      301 aaaagtgcct acatgtttat gaaaagaaac tacatcagaa tgacagacct aggtgtcatg
      361 gtcaaccaac cagttttcat gcgtagaaag gatcagatca cagaatcctt aatgaaggaa
      421 tctgatgaag gtgaacacta taaacagata tttggcatgg agcatactaa gggcctgaag
      481 atgtggctct ctggtcaaag agccctcctt ctcagttcct gtgcatttag gaatgctgtg
      541 attcatttcc atgtcatcaa cagaaccact caggtgagtc attcacagga actaggctcc
      601 atttcccttt ctgatgccaa aagtcttctt cctacagccc tggttgctca gcatttccat
      661 gtaggctggg tggccctaca tagcatatgg tgtcatcttc cctagaaggt aagaatatgg
      721 gacatgtact gtgtcattct catctgccca tctgtaggag ggcatgtgct caactgtctc
      781 cttattctcc tcctcaccaa caggacacat gggacacata agatgtgagg tgttttcctg
      841 cactgtgcaa cccttcttct gtcagcttgt ctggttcaga acataaaaca attggtcaga
      901 ggacaagtaa ggtctttcat tcatctgaaa tcttaagtaa tgaattttga aaagtctgtt
      961 taagctcttg aataaggtaa acacagaaaa cacagtacag cattatgtgt atttaaccac
     1021 agctaatcta taaatctaaa gaagtcaacc caaactgggt cagtcttccc agtctggatt
     1081 tttggcacta tcacaaatac agctttacat ggaactccca gtgaattgcg tctcctcagt
     1141 gagggatcaa gagctggaca gacatactgg taaacatcta actcttgttt ggtctgatat
     1201 gaggttctcc ctacaggctc atgtgtttga tcacaagctt ttgcctttgc cttagaagtt
     1261 tagggaatat ctagaagtta aggctccaaa caaacattag aggggtatag ccctgtttca
     1321 cttctagcct gggatcactc taccacatgt gaacaatcct caccaccatc tctcgttacc
     1381 atggcaactg cagttactac ccctttccca ctagtatgaa ctggacacga aactatgaac
     1441 agcaaatgcc ccgctcttag gttgtttctg ttgagggttt tatcactgca acaggaaaag
     1501 tcagcaatac agtcctggta tatccctttg cccacttctc tgggtctttc tccagcagtc
     1561 aatttcttga gatggccacc agaaatggaa acgggttggg gaaagggaca ttgtatcctg
     1621 ctgcagatat tttccccatg cctaaaatgc agatttttag gttaggcagg tggcagaatt
     1681 tttctcttct gctttggtgt tagagagtgt tctctctagg aaaaataccc cagctaacac
     1741 tttggaatga caactttaca tggaactccc agtgaattgc gtctcctcag tgagggatca
     1801 agagctggac agacctactt gtaagtgtcc caaacccgaa caatgccagt gggccttggt
     1861 ttcttcatgt gtcactgagg tttgcaatat cattaagctt tcataagcac taacatggga
     1921 atggagagct agctcagcat gtaagagtgc tgatcattgc tcttgcaaga ggacctgagt
     1981 ttagttctca acaccttcac ctgggaactc acaacctcct ttaactcaaa tcctggggca
     2041 tctaatgccc tcctttggcc tctgttggta ttgtacacac cttgtatata cacacgtata
     2101 taaataaagt taaaattaaa aaaaataatt agtggaatta caaaaatgca cttaaaatga
     2161 tattagacac atattggagg aggtggtttt cccagcatcc cttccagaa
//
