LOCUS       XM_039097369            2502 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus carcinoembryonic antigen-related cell
            adhesion molecule 5-like (LOC102550682), mRNA.
ACCESSION   XM_039097369
VERSION     XM_039097369.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2502
                     /gene="LOC102550682"
                     /note="carcinoembryonic antigen-related cell adhesion
                     molecule 5-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 19 Proteins"
                     /db_xref="GeneID:102550682"
                     /db_xref="RGD:7692144"
     CDS             1..2502
                     /gene="LOC102550682"
                     /codon_start=1
                     /product="carcinoembryonic antigen-related cell adhesion
                     molecule 5-like"
                     /protein_id="XP_038953297.1"
                     /db_xref="GeneID:102550682"
                     /db_xref="RGD:7692144"
                     /translation="MEVFSVLSCKWCTHWQGLLLTASLLTYWHLPTTAQITIELVPPQ
                     VVEGENVLIRIDNLRENNITLAWYRGMSIKSPQIGQYTLATNVTELGPGHSGRETLYS
                     NGSLQIYNVTQEDIGFYSLRIINSHAEIVSIASIYLNVYSSLLTYWHLPTTAQITIEL
                     VPPQVVEGENVLIRIDNLRENNITLAWYRGMSIKSPQIGQYTLATNVTELGPGHSGRE
                     TLYSNGSLQIYNVTQEDIGFYSLRIINSHAEIVSITSIYLNVYSPLWRCEHHSPYAKL
                     TVESVPPRISEGESVLLLVHGLPRNLLSLFWYKGVFAVKKFEIAKHIKATNSSVPGPA
                     HSGRETVYSNGSLLLHQVTQNDTGFYTLRTMSTDLKDEVARVQLQLGTSFSTCCNSFQ
                     VKIEPVPQSVAVGQSVLLLVHNLPEDFQSFFWYKSAYRTNTFKIAEHKRTMDSTIMGT
                     AYSGRELVYTNGSMLIHHVTEKDAGLYMLEILSKDFKIEKIHVQLHVNTLHLAPVSNS
                     KDPISTAHPSIESVPPRIAEGESVLLLVHNLPKNLMSLFWYKGVFAEKKFELTQHIRA
                     TSSSTQGPAHSGRETVYSNGSLLLHNFTQNDIGFYTLRTMSTDLTDQVAHVQLQLDTS
                     TCCNLTSDQLKIEPIPQNVAVGKSVLLLVYKVPGEIQTFFWYKSVYRTDKFKIAEYST
                     AVKSTIWGLAHSGREMVHLNGSMLIQNVTENDAGLYMLEILHKDFKTERAYVQVHVNN
                     PVSWPFVRVTDTMVRVQSSVVFTCFSTDPGVSIRWLFNKQSLQLTGRMTLSPSKCKLS
                     IDPVRREDAGKYQCEVSNPVSSKTSLPVSLTVIEE"
ORIGIN      
        1 atggaagtat tctctgtgct ttcctgcaag tggtgtaccc actggcaggg gctcctgctc
       61 acagcctccc ttttaaccta ctggcacttg cctaccactg ctcaaataac cattgaatta
      121 gtgccacccc aagtggttga aggagaaaat gttctcatac gtattgacaa tctgagagag
      181 aataatataa ccttggcctg gtatagagga atgagtatta aaagccctca aattggacaa
      241 tatacactgg ccactaatgt tactgagctg gggcctggtc atagtggtag agagactttg
      301 tacagcaacg gatccctgca gatctacaat gtcacccagg aggatatagg attctacagc
      361 ctacggatca taaacagtca tgcagaaatt gtatcaatag catctatata cctcaacgtg
      421 tactcctccc ttttaaccta ctggcacttg cctaccactg ctcaaataac cattgaatta
      481 gtgccacccc aagtggttga aggagaaaat gttctcatac gtattgacaa tctgagagag
      541 aataatataa ccttggcctg gtatagagga atgagtatta aaagccctca aattggacaa
      601 tatacactgg ccactaatgt tactgagctg gggcctggtc acagtggtag agagactttg
      661 tacagcaacg gatccctgca gatctacaat gtcacccagg aggatatagg attctacagc
      721 ctacggatca taaacagtca tgcagaaatt gtatcaataa catctatata cctcaacgtg
      781 tactcacctc tttggagatg tgagcaccat tctccctatg ccaagctcac cgttgaatca
      841 gtaccaccca gaatttctga aggagaaagt gttcttctac tggttcatgg cctcccaagg
      901 aatcttctat ctcttttctg gtacaaaggt gtgtttgcgg tgaagaaatt tgagatcgcc
      961 aaacacataa aagccacaaa ttcaagtgtt ccagggcctg cacacagtgg tcgagagaca
     1021 gtatacagca atggatccct gctgctccac caagtcacgc agaatgatac tggattttat
     1081 actctgagaa ctatgagtac agatctcaaa gatgaagtag cacgtgtgca gctccagctg
     1141 ggcacctcct tttctacttg ctgtaactct ttccaagtca agatcgagcc agttcctcag
     1201 agtgttgctg tagggcaaag tgttcttcta ttagttcata atttgccaga agactttcaa
     1261 tcatttttct ggtacaaatc agcatatagg acaaatacat tcaaaattgc ggaacataag
     1321 agaaccatgg attccaccat catggggact gcatacagtg gaagagagtt ggtatacacc
     1381 aatggatcca tgctgataca tcatgtcact gagaaggatg caggattgta catgctagaa
     1441 attttaagca aagacttcaa aattgaaaaa atccacgttc aactccatgt aaatactttg
     1501 catctagccc ctgtttcaaa ctccaaggat cctatttcca ctgctcatcc cagtattgaa
     1561 tcagtgccac ccaggattgc tgaaggggaa agtgttcttc tactggttca caatctccca
     1621 aaaaatctta tgtccctatt ttggtataaa ggggtgtttg cagagaagaa atttgagctc
     1681 acacaacaca taagagccac aagctcaagc acgcaagggc ctgcacacag tggtcgagaa
     1741 acagtgtaca gcaatggatc cctgctgctc cacaatttca cacagaatga tatcggattc
     1801 tatactctac gaactatgag tacagatctc acagatcaag tagcacatgt gcaactccag
     1861 ctggacacct ctacttgctg taacctcacc tctgaccaac tcaagattga accaatacct
     1921 cagaatgttg ctgtagggaa aagtgttctt ctcctagttt ataaagtgcc aggagaaatt
     1981 cagacatttt tttggtacaa atcagtgtat aggacagata aatttaaaat tgcagaatac
     2041 agcacagccg tgaaatctac tatctggggt cttgcacaca gcggaagaga gatggtgcac
     2101 ctgaatggat ccatgctgat ccagaatgtt actgagaatg atgcaggatt atatatgtta
     2161 gaaattttac ataaggactt caaaactgag agagcctacg tgcaagttca tgtaaataac
     2221 cctgtttcat ggcccttcgt gcgagtcact gacaccatgg tcagagtaca gagctcagtg
     2281 gtcttcactt gcttctcaac tgaccctgga gtctccatcc gttggctctt caataagcag
     2341 agtctgcagc ttacagggag gatgaccctg tccccatcaa agtgcaaact cagtatagat
     2401 cctgtcagga gggaggatgc tggaaagtat caatgtgagg tctccaaccc agtcagttca
     2461 aagaccagtc tcccagtcag tctgacagtg atcgaagagt ga
//
