LOCUS       XM_039101164             633 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin-like protein FUBI-like
            (LOC102550534), mRNA.
ACCESSION   XM_039101164
VERSION     XM_039101164.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101164.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..633
                     /gene="LOC102550534"
                     /note="ubiquitin-like protein FUBI-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 long SRA reads, 22 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102550534"
                     /db_xref="RGD:7701116"
     CDS             170..511
                     /gene="LOC102550534"
                     /codon_start=1
                     /product="ubiquitin-like protein FUBI"
                     /protein_id="XP_038957092.1"
                     /db_xref="GeneID:102550534"
                     /db_xref="RGD:7701116"
                     /translation="MQLFVRAQELHTLEVTSQETVAQIKAHVASLEGIAPEDQVVLLA
                     GSPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKRKKK
                     TGRAKRRMQYN"
ORIGIN      
        1 ggtctctgag ggcagaacac tctagaaaag ccctgaagaa ttgcaagttc ttgaacataa
       61 cgagatgcaa gtcacaaaac cgaggactgt tttagaaaat gaagaaacgc ctctttcttg
      121 actccatctt cgaggttgca gcagcggcgt ccgagggtaa gtagccaaca tgcagctctt
      181 tgtccgcgcc caggaactac acaccctcga ggtgaccagc caggagacgg tcgcccagat
      241 caaagctcat gtggcctcac tggaaggcat tgccccggaa gatcaagtcg tgcttctggc
      301 aggctcgcca ctggaggatg aggccaccct aggccagtgt ggtgtagagg ccctgaccac
      361 tctggaggta gccggccgca tgctgggagg taaagttcat ggttctctgg ctcgtgctgg
      421 gaaagtgaga ggtcagactc ccaaggtggc caaacaggaa aagaggaaga agaagactgg
      481 tcgggccaag aggcgaatgc agtacaactg acgctttgtc aatgttgtgc ccacctttgg
      541 caagaagaag ggccccaatg ctaattccta agtcctgttg tgatcctgcc acactaataa
      601 agctactttg cccagaaaaa aaaaaaaaga aaa
//
