LOCUS       XM_039092576            7799 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102550529
            (LOC102550529), mRNA.
ACCESSION   XM_039092576
VERSION     XM_039092576.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 15% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..7799
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7799
                     /gene="LOC102550529"
                     /note="uncharacterized LOC102550529; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:102550529"
                     /db_xref="RGD:7503920"
     CDS             1..1116
                     /gene="LOC102550529"
                     /codon_start=1
                     /product="collagen alpha-1(I) chain-like"
                     /protein_id="XP_038948504.1"
                     /db_xref="GeneID:102550529"
                     /db_xref="RGD:7503920"
                     /translation="MVSAGPGLREECAPASFPALRWTESSFRRSGNAVHSQVRSKDHL
                     KFLVAVVRVSRPEAARCPRAGGNKETTKTCPRTQPQPPLLVRETDRGSCPRGGRALEP
                     WRWGSHPLRVLPAVRRPGSGPGFQLSPPSRGRAAGVRGTPLGSAAPAKAAPGLLPAAC
                     AVAPGPRAPRFRGKRGWRPGPRPRETALAAPQVPPQRPGPGSRGFPKSGGPESLNPEA
                     GPSHGSDDRVASGARCSNPAGFGLVAVVSLPGWPGRFANFPRRAGRCGWERRWNRRPP
                     RRRARLQHEASRRSRHVLPPGPGAGAPGEDGRGGPGRRAVGARPGAGRGSGDARGPSG
                     QRAAATRVEFGGIGKRPWVTPLSKPKARPGLEPAARS"
ORIGIN      
        1 atggtgagcg ctgggccagg cttgcgggag gagtgtgccc cagcctcctt ccctgccctg
       61 cgctggactg agtcaagctt ccgccgcagc gggaatgctg tacatagtca ggtccgttcc
      121 aaggaccact taaagttttt agttgctgtt gtgcgagtga gccgcccaga agccgcccgg
      181 tgcccacggg ccggaggaaa taaggagaca acgaaaactt gcccgcggac ccagccgcag
      241 cccccgcttc tagtccgtga gactgatcgg gggtcgtgtc cacggggcgg cagggcttta
      301 gagccttggc ggtggggaag ccacccactc cgcgtcctgc ctgcggttcg gcggcccggc
      361 tccggcccag gcttccaact gagtcccccg agccgaggta gagccgccgg agtgcgcggg
      421 acccctctag ggtcggccgc ccccgccaag gccgctcccg gcctgctccc tgccgcgtgc
      481 gccgtggccc ctggccctcg ggccccacgc tttcgcggga agcggggctg gaggcccggg
      541 ccgaggcctc gggagaccgc cctggctgcc ccacaggtcc cgccccagcg tccggggccg
      601 ggcagccgcg gcttcccgaa gtccggaggc cccgagtcac tgaacccgga ggctgggcct
      661 agccacggct cggacgaccg cgtggcctcc ggggcaaggt gctcgaaccc cgcgggcttc
      721 gggctcgtcg cggttgtcag tctgcccggc tggcccgggc ggttcgcgaa ctttcctcgc
      781 agggccggcc ggtgtgggtg ggagcgtcgg tggaaccgaa ggcctccgcg ccgccgagca
      841 cgcctgcagc acgaggcttc gcggaggagc aggcacgtgc ttccccctgg gcctggggcg
      901 ggagccccgg gggaggacgg ccgagggggc ccggggcgca gggctgtggg cgcgcgccca
      961 ggcgcaggcc ggggcagcgg ggacgcgcgc gggccctcgg gacagcgggc cgcggccacc
     1021 cgtgtggagt ttgggggcat tggaaagcgt ccttgggtca cccctctctc gaagccgaaa
     1081 gcgcgtccgg ggctggagcc cgcagctaga agttagcggg ctctggagcc cgaactctgg
     1141 ggcaccgaac agcgccaaca cgtcctggga gcgcaacgaa atctccaggc gtcccgagcg
     1201 cagccggtgt ccgtccgctg gccccggagg gccggaaggc ctacccttgg aggacgcggc
     1261 gagggacctg agggtggcag ctgggccacc tcagccaggt ctaggcccct tgaagctctg
     1321 aggagaggca cccaaataag aaggcttgtt ggggcgcttg tctggctctg atactggctg
     1381 cagagggttg gagaagaggg aggtttttct aaattgtgaa tgtgtgtgca agtctctttc
     1441 tttcttcctt ccttccttcc ttccttcctt ccttccttcc ttccttcctt ccttccttcc
     1501 ttccttccta attaggatag tggggttggg tggggggccg agggaggagt ctgagaaaat
     1561 aaaacaggtg acaaacctta aggagtgtca gtagattcac acatgcgtag tccagaaacc
     1621 aaaactgaac aaaacaaaaa ctcccaagtt tttgttttaa aagaaaatgc cacccaccca
     1681 caaccacccc ccgtgggacc ctatgtaatt tgtggaaaat aatactctcc atgggtattg
     1741 tgattttttt tctttagttt aaaaaataat agttcgttag taactggaag aatgaattct
     1801 aatgttaatg atgtcaaaga tgtctgatgg taaggttgtg tttaaaggtg aagaaatgaa
     1861 atatgtctgc tatacaactg tagccaatat atgttattgg taaagagaat ccgcatgatc
     1921 actattcatg accagaaaat tacttggctt tttgatagag aattaattta agaatagcaa
     1981 taagatattt ttataaagtt ccccaattag tggggtttgg tgacataagc ctgtaatccc
     2041 agttctaaga atgggtggac acaggaggat caggagttca gggccaacct cacttacata
     2101 tagttaaaaa cctgcctggg ctacaggaga ccctaagaca aacaacccca ttctcccaag
     2161 tcccccaaaa gaaaggaaaa acttaaaaac agaaaagtaa cacgtgattc tgttttcaca
     2221 ctttgtcttc cttcctccaa aaatttcaga atctcatatg aaaatggaaa agcctcaaga
     2281 tcaacaacaa tgaaaatcaa taacttaaat aatactgtat aagaatggat accttatttg
     2341 acaacaggaa gttacattat cttaaagaaa taagatgttt agataagtat ttgggggggg
     2401 ggagtgtcta aattatactc tttgaaagtc aaagattctc tgcctgtttt taatatatga
     2461 ttctccagaa gtgcctttta attattatcc tgatgtactg gtatctaaaa agaagtgctc
     2521 gtgctctctc tctctctctc tctctctctc tctctctctc tctctctctg tgtgtgtgtg
     2581 tatgtagaag gggggcacat tccattttga gtcagtgttt cctttagttg tgttttaaaa
     2641 ctgagttgaa ctctacttaa aacacattct aggcagttct tcagaagcct taaggagcag
     2701 aacattgtct ggaagtcctt caaccgtttt agtgacatgg cagttaaaca ggatagacca
     2761 aattgctttt aagtacatct acttttgttc tggtagagaa aaagaaaata ggtgtgtgtt
     2821 gctctcagtt gagttgggca ctgctgtaat atacaaaacg gctcacccac gtttctagac
     2881 tcctgctgga gagcaggaac atccggaaca ttgttacaac tgtttcaaga agccttagag
     2941 ttcaaatggg gttggggctc cgtttaatca gtgataaagc ctcaacagag aaacattcag
     3001 aacctactgc ttctaaagaa ctgaactctt tttggtggcc agtattcaga gacaaaattg
     3061 cattacactt ccaggtcaca aatgcctttt taaaaaggtt aatctttatt gagctgctta
     3121 tgaaaactat ttggaatttt tagaaattcg tttaaagtag attgtaaaat tatgatttaa
     3181 ggaatttgag tccaaatttt tggagggatt gaagtggaat ataaataaat cataactaat
     3241 tttgatactt ggggtaaaaa ctaaaatgta agagtaaacg gtctctgatt caacagcata
     3301 gtgtctaaag agcttataaa atatttttag tgtacaaata ttcttatgta tgtttaaagc
     3361 tctgagatac accgtcatct gtcacagcta tttcaaatag ggatcgtatt ttctttttaa
     3421 aatttatttt aaattttttc ctgtgaaata tacatttgaa agaaattata aaacagattt
     3481 tttacacttt aaaaaataat gaaatataca tggtgttaca agtttttaac aaatgctttg
     3541 aaaaggagac ttacagttac aatgtcagta cttaaacttg atgttaagga aagtgcatct
     3601 atgttctagg cattttatta aatctattag taactggctg tcttttaaga gaggaatact
     3661 taagagaggt ataaaaattg cacaggcttt tataaattca taggagctct caatggcgcc
     3721 ttgtctggct gtgttcctaa tgagagggca ccaagagaag atgctgcttc cccagacttt
     3781 atatttgatg ccgttcaagt gatggttctg aagcctgagt ttagttctgg cacctccaca
     3841 catctaacct aacccattct ttttgaggct gtgcacttct acatcttccg aagagaccac
     3901 tggactttaa tgttaatctc tccttcctct agcactccac atcaaggatt ttgctttaaa
     3961 acagttgggg aagagaggga ggagatacat gggcttgctg gaaaaagcct ataaacgaca
     4021 cccttgagag actgaagcag gaggattgct gtgaggctga ggccagcctg ggctacatag
     4081 caagcctctg catctgagtt gggggtgggg gttgaggaca agtggacagg atctgcatta
     4141 agtctcagct gtttaagact gaggagggtt tcctgcgatt ctttttactt ttgtacatct
     4201 ctggttgttt tcttgatacc ttaaataaaa ctggggagtg tagctcagtg gtaaatatct
     4261 ataaatcccc gagttcacct cagtcctggg ggtaaaagaa tatttagaag cctgtatttg
     4321 tttacaggaa gcagtcttct cagggagccg tggcaatcgg acttcccagg ggctgcctca
     4381 cgcaccatta ttcacctgtg tgaataatgt tttgtttaat ctgttaaagt ctgagaggtc
     4441 agtggtaggt gaggctggtg gcttggctac ttatgcaagg ttgtacactg gtatgtacgt
     4501 agccagcagg acttggcact cagggtcaga gcccacactc tttgctctgg gagctgctac
     4561 ttcattttgt agggttgcag caaatactcg ttcaaagaag gcacgttgta caatttgaga
     4621 acagattatc agactaatct gagctgtctg tttgtttact gtgcttgttt gatcaactgg
     4681 ccacaaccag aactcacaag tgaggaggaa tctcattgga ggaattgctt ccatttaagt
     4741 agcctgtggg aaggtctgaa agccaccttc tttcactttc tctttctttt tctttttcct
     4801 tttcttttcc ttcttgagac ggggtttttc tgtgtatccc tggttgttct ggaatttgct
     4861 ttgtagacca ggctggactc caattcagag atccacctgc ctatgcctcc tggattaaag
     4921 gccaccatac cagtggaaag gctcagcacc cttgggcact ctccttccaa gccaggtagt
     4981 cctgggctgt atgaggatat aggaggacac cagagcaagc aagccagtaa gcagcctttc
     5041 tccagtttct gcttcagttc ctgcctccgg attcctgcac tcaagtcctg cactggcttc
     5101 cccttcataa tggtcaggtg tacgatttcc tttcccaaat tgccttaggt caatagaaag
     5161 caaactagaa agtttattat gttctatgct ggaggttaaa cccaggtcct tagtaggtgt
     5221 ctgtcactga gcgaatacct ccagccccag ggggtttcag tttgggcaat gaaatcattg
     5281 tgtaggaagt tcttaacctt ttttttttat ttccgggtat ggctttttgt tttaatggtt
     5341 ttcagagaac ccattataga gcattaagtg gagagactag agtgacattg ggtctcttcc
     5401 tagttcctcc tttaattcct tactaatttt aacatttaag taatttaaaa attccttact
     5461 ggttggttca tgtttatgag tagtgttttc tgttcttgac tgagactttt ttcactcttt
     5521 atgacagtgc tttgctgcaa ttataggact cctgatggag ggaaggctat gtaaaccaga
     5581 taggaagctg ggagctgttt aaccgccctg tatacaccgc ctaatttgct tgtaaagaaa
     5641 cgttcaggag ttcgttctga ctgaccaact tggtttatgt gtgcattaaa tcagtgtgat
     5701 caatgatgcc caggcaaaga aatagcacat gacaactgaa agcttcgcct ggtatccctc
     5761 ggtggtcaga gtccctcctc cccagagatg ctcccagagg ccggaagaag gcatcccctg
     5821 tagctggagt tacagctgcc tatgaaccgc ctgtcatgca tgctggaaac tgaactcagt
     5881 cctgtgcaag aagatcaagt gcttttaact atccacctgg accatgtgat gttcctgcct
     5941 cagcctcctg cataaatgag attaaagaca caagacaggc aaacccagct tatgttgttt
     6001 acatgtgaaa gtgtaactga accaagtctc taaggaagct tgaaaaatat gcctcctgta
     6061 tggcagataa attaccatct gagaagtctg cagatgctta ataagccagc ccataattct
     6121 aaaagcaact tgtagaaaaa cagttaagga atgcgtgctt attctaactg tattttgaaa
     6181 tgaactaaga cgagcgttaa ataatagaaa aacacagaga aagaacagag agaacgaggc
     6241 tctggaagct gtgacgctga tggatggtga gcacagacgc ctagctagct gggataggca
     6301 tgtggaccat accacagtta ctgttggtgc ccagtgcagc ctgcatgctc tcaggaggaa
     6361 gcgagagccc cttcttaggt tgaagttctg taatcagctt ctccacttta gatgtttgag
     6421 cctggacaca attattatag atcaagtatg ctgtatcctg ggccgtatgg gctggttccc
     6481 cttccacatc ttatacagcc tgtttagaaa gtagacaatc tagatgtaga tgccctccat
     6541 accctgacgg ccttttaaac tgcacccaat attcctttgg caaagtataa aactaagagc
     6601 agcacgagct gtctagtaat atcagaggtt tcgctaaaat ccatcatttt ctgccaccaa
     6661 cccttttttg acaggctggc ttggagcttg ctctgtagac taggctggcc ttgagctcac
     6721 aagagagcca catgcctctg cctccagaag gcggggtatg cgtgcactac gtcatcaggc
     6781 cataaagcag atctcttctt tctgcacgtc ctctcagcaa acacatcaac caagtctgtg
     6841 aactctcttc tctacgtact gactgataag gaagagaaac atacacagcc aagacacaga
     6901 ctgcaccaca gaatcagtcg ccaacaactt ccctatcatc ccaagggaca atgttcagcc
     6961 ttaatcacct ttaatctctt cataacactt catttgagta gtcactttat cctctatgaa
     7021 gtacctgtcc tgtgtgagat aggagtcaac ccagatccta acaattccag ggtacctctt
     7081 catgaggaac cagcttttac tcttagtttc ctttgtgact gctcttttgt ttgtttgttt
     7141 gtttgtttcc ccattaagtt ttggtattga aactcctgtt gatgactttt tccctttaat
     7201 ttcatatgcc ctaaatgggt gtagctgtgc ccaattgaag gtattcaatt gatcctggtg
     7261 tcagcagtgc tcccctctac ctgccccagt ggttgccttt atatttttat gtgccttgaa
     7321 cagctcaatg gctgtgccac ttcctaacct tcacatggct aatccactcc ccccccccat
     7381 ttccgaatta cttcttgcta aaatctatac tccatctttg ctgccctagg cccagtcatg
     7441 cagccctctc gagctgcgtt tcctggctcc tacgcgacaa ctgtgttctc tgtcctatac
     7501 ctctccttcc tccttccttg gtcccttgcc tggaatccta aaaatcccac ttctggctct
     7561 ctgcccagcc acagcattag agcaaaccca caacatttcc ccctttctgt acatttaaaa
     7621 aggccctttt ttttttccct ctcagatacc tgttggacat aattataaac aattacgtaa
     7681 atgtggcaac ctagataaat cactctatca tctatcctga cttaaagagt taaattctgt
     7741 gtctgaattt tgttgacttt aacttgtatt accatctgaa aaccatcctt taaaatcta
//
