LOCUS       XM_039080501            6842 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ADNP homeobox protein 2-like
            (LOC102550284), mRNA.
ACCESSION   XM_039080501
VERSION     XM_039080501.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080501.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6842
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6842
                     /gene="LOC102550284"
                     /note="ADNP homeobox protein 2-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102550284"
                     /db_xref="RGD:7498642"
     CDS             555..4001
                     /gene="LOC102550284"
                     /codon_start=1
                     /product="activity-dependent neuroprotector homeobox
                     protein 2-like"
                     /protein_id="XP_038936429.1"
                     /db_xref="GeneID:102550284"
                     /db_xref="RGD:7498642"
                     /translation="MFQVPVENLDQIRSMRPWVKSVLLNIGLAGCKELLKDLKGFGPS
                     DRYFYNTSWPDIASRELVRKKVRYRTKPYCCSLCKYSANVLASLKNHLNHCHEDEVDQ
                     ELQIQCPDCSFASRPDVVSRHFWLFHEPAGKVHSPKEKVLGNGKSLKGYVKHFTCLKC
                     NFSNTSFCSMKKHVLITHFHSLLNAYIGLQTKEDQQQPKAAILSGVNTLPPERFYCKK
                     CSTTMSSQEELMSHILTSDVHKNLENKLRSVISEHNKRTGLLKQVTIAPKPQSGLSRP
                     PNSSALHTTTSSKPPWPHLTLPQNTPSLSMVQPVTLAQPVTSAHVQPRVGVPGSSWSL
                     THSLSNTTQSHVAFVSSPLPVSQTSLTLQPSVPSTVIFSGRASPNKPVDVPALPVSRP
                     LGPVNKSVGMSNIPMSQAIQPGILPLTQPMGSTILPLGPLVRSVGPTSRLTRPDTPSS
                     GLSVSNGVLQTTTPGTISVGQVVSLAVLPEGQMTPASVIPAQTAASGVLPTGQAVQSR
                     VLHIGQTVSSQVLPSCQTVSFRVLPTDHLAPSGLLSRKQLVVSDGSVNQGVSSRIPLL
                     GQPITSGVLPAGPPVRPSVLQLTQSVGPSLLPVSQSVRAEVSQNTLFLKSGSGFRKLL
                     PTGTQVNGKPIYMLDPIPITLPIPQGASLTTITPPQGPHKFLSPSVSTQRSSALPSLS
                     SSQGRVSTADQNIFVRVSSPEVRQANQWKICPVCKVFFPSNVYQAHMEVVHRQSEFNS
                     SEKLEPVKLAVCAPFLKWTREKAMRCLSCKCLVSEEELMYHLLTHGLGCLFCPCTFHN
                     IQDLLEHSRIKHLGRKKLSLDYSNRGSQLSLDANGNLLVPHLDFIITLPKEMIGEQEI
                     CLAILSGIYSTSLVPLYVKVRSQVKAVPKLSEQELTCPLCLSIFIIADAYVLHLKDRH
                     HIMPVAYTGLSSPIFRCVHCRGVYSGNLTMAAISLHLLYCEYAPKGNSSDQVQSSFVE
                     SREQQFVNGKKILDSTCPVKRKWPDGHLGAEDHRRDREDSLHVLKGNAPSGLEEGTNA
                     VPLKRQRNESTSQGLVVNDDLLQILALDPQKYRDCHEKKKQFLKDYFHKKPYPTRKEV
                     ELLSLFLKMDKINVALFFGTRRYICLKAIEVHRPSVLLGFNMSELKNVKHRLNFEPQN
                     SV"
ORIGIN      
        1 ctctccttcc tcatctccca accagtccct atgtattcat attgtcatct ctctggtcca
       61 cgtagcctag tacagctaac cctctggcca agctaactag ttctgtcttc ttgttctaga
      121 accttgtcaa gcagaaaccc tcagtgctgt aacattttct gactttcctc attcagtcgt
      181 gagctgacat ttattgggtg tctagtatgg ctcaggatgt ggcaacacta atctgtttgg
      241 ggaccggatc ttgtccttga agagctaagc atgtggcagg agacgacaca acacaggcag
      301 cgggcataag tgaaaaacca actcctcgcg gcgggcggaa gaggaaaagg cgaagcccag
      361 gaagaccctc aagccctctt catgccattg gctgtctggt gtgagtatgc aaatgaggag
      421 acgtcacttc ctataatagc tggccgccat cttctcgcac atgccagtgc gggaagacag
      481 acgagtggtg agcagctccg actagcaagc tgaggagagg cttgagggcc tcccagtggc
      541 agaacatttc aaaaatgttt caagttcctg tggaaaatct ggaccaaatc agaagtatgc
      601 ggccatgggt gaagagcgtt ctcctgaata ttggacttgc tggctgcaaa gaattgttga
      661 aggaccttaa aggctttggc ccaagtgaca gatactttta taatacatct tggccagata
      721 ttgcttcaag ggaacttgtc agaaagaaag tgagatacag aaccaagcca tactgctgta
      781 gcctctgcaa atactcagca aatgtgcttg cttctctcaa aaatcatttg aatcattgtc
      841 atgaagatga ggtggaccaa gagctgcaga tccagtgtcc agattgctca tttgcttctc
      901 ggcctgatgt ggtgagcagg cacttctggt tgttccatga acctgctggg aaagttcaca
      961 gcccaaagga gaaagttctg ggaaatggga agtcattgaa gggttatgta aaacatttta
     1021 cttgtttaaa atgtaacttt tccaacactt ccttctgtag catgaagaag catgtgctga
     1081 tcacccattt tcattcttta cttaatgcct acattggcct tcaaactaaa gaagaccagc
     1141 agcagccaaa agctgctatt ctttctgggg taaacactct accacctgaa agattctatt
     1201 gtaaaaagtg tagtaccact atgagtagcc aggaagagct catgtcccat attttaacat
     1261 cagatgtaca caagaatttg gagaataagt tgaggtctgt gatttcagaa cacaacaaga
     1321 ggactgggct tctgaagcaa gtgaccattg ctccaaagcc acagtcaggc ttgtctagac
     1381 caccaaacag cagtgctcta catacaacta cttcatcaaa gccaccttgg ccccatctta
     1441 ccttgccaca gaatacccca agtctatcca tggtacagcc agtgactttg gcccaacctg
     1501 tgacttctgc ccatgtacag ccacgggtgg gggttccagg atcttcctgg agtctcaccc
     1561 attctctatc taatactact cagtcccatg tggcttttgt ctcaagccct ctacctgtta
     1621 gccagaccag cctcacactg cagccttcag tcccctcaac tgtcattttc tcaggcaggg
     1681 cttcacctaa taagcctgta gatgttcctg cactacctgt gagtcggcca cttgggcctg
     1741 tgaataagtc tgttggaatg agcaatatcc caatgagtca agccatccaa cctgggattt
     1801 tacccttaac acagcccatg gggtctacaa ttctaccttt gggtcctcta gtaagatcag
     1861 tggggcccac aagcagactg accaggccgg ataccccttc ttctggtctt tctgtcagta
     1921 atggggttct gcagaccaca acaccaggaa ctatttctgt gggccaggtg gtctcattgg
     1981 cagtccttcc tgaaggtcag atgaccccgg cttctgtgat tcctgcacag acagcagctt
     2041 ctggggttct tcccactggc caagcagtcc agtccagggt tcttcatata ggtcagactg
     2101 tctcatcaca ggttctcccc tcttgtcaga cagtgtcttt tagggttctc cctacagatc
     2161 atttggcacc atctgggttg ctgtcccgca aacagctggt ggtctcggat ggctctgtaa
     2221 accagggtgt gagctctcgt attcctctgc ttggtcagcc tattacatca ggagtccttc
     2281 ctgcaggtcc accagttaga cccagtgtgc ttcagcttac acagtctgtt ggtcccagtc
     2341 tcctgccagt gagccaatca gtgagagctg aagtttcaca gaataccctg ttcctcaagt
     2401 caggctctgg ttttaggaag ctccttccaa caggaacaca ggttaatggg aagcccattt
     2461 acatgctgga ccccattccc atcactctgc ctattcctca gggtgctagc cttacgacta
     2521 tcactccgcc ccaggggccc cacaaatttc tctcccctag tgtgagtaca cagaggtcca
     2581 gtgctctacc cagcttgtct tcctcacagg ggcgggtaag cactgcagac cagaatatat
     2641 ttgttcgggt ctcttcacct gaggtcagac aggccaacca gtggaaaatc tgcccagttt
     2701 gcaaggtgtt ctttccgtct aatgtctacc aggcccacat ggaagtggtt cacagacaaa
     2761 gtgagtttaa ctccagtgag aagcttgaac cagtaaagct ggctgtgtgt gcaccgtttc
     2821 tgaaatggac aagagagaaa gccatgcgct gcctctcctg caaatgctta gtctcagagg
     2881 aggagttaat gtaccactta cttacacatg gcttggggtg cctgttttgc ccatgtactt
     2941 tccacaacat tcaggatctt ttggagcata gcagaattaa acaccttggg aggaagaagc
     3001 tgtctttgga ttatagtaac aggggctccc aattaagcct ggatgctaat ggcaacctgt
     3061 tggtccccca tcttgatttc atcatcactt tgccaaaaga gatgattgga gaacaggaga
     3121 tctgcctggc tatcctttca gggatatact ccacatcact ggtacccttg tatgttaagg
     3181 tgaggtctca ggttaaggct gtacctaagc tcagcgaaca agagctgacc tgtcctctct
     3241 gtttgagcat attcataata gctgatgcct acgtgttaca tttgaaggac agacaccata
     3301 ttatgccagt ggcctacaca gggctcagtt cccccatctt caggtgtgtc cactgtcgtg
     3361 gagtctattc tggaaacctg actatggcag ccatctctct tcatttgctg tattgtgaat
     3421 atgctcctaa aggcaacagc tcagaccaag ttcagtctag ttttgttgag agcagggagc
     3481 aacagtttgt taatgggaaa aagattcttg attctacctg tcctgtaaaa agaaagtggc
     3541 cagatggcca tttgggggca gaagaccata ggagggatag agaagattcc ttgcatgtac
     3601 taaagggtaa tgcaccctca ggtctagaag aagggactaa cgctgtacct ttgaagagac
     3661 aaaggaatga aagcacaagt cagggactag tggtcaatga tgatttactc cagatcctag
     3721 cattagatcc ccaaaaatat agagactgcc atgagaaaaa aaagcagttt cttaaagatt
     3781 atttccataa gaaaccatat cctaccagaa aagaagtaga actgttgtct ttattcttga
     3841 aaatggacaa aattaatgtg gctttgtttt ttggaacaag aagatatatc tgcttaaaag
     3901 caatagaagt ccacagaccc tcggtacttc taggttttaa tatgtctgaa cttaaaaatg
     3961 ttaaacacag actgaacttt gaaccacaaa actcagttta aagtcctggg cagtagtctg
     4021 tgttgtaccc tcctttgctc tttgtattgt tttctgtggc ttttctgggt gttgcaggtg
     4081 ctcaggaata cttgggttaa gaagtaaata ttactccaaa tgtactgatc cctgtagttc
     4141 tgtctcagca gttattccta agtcgcccct gcaacctact atgtgaatta agttttggta
     4201 tttccgaacc ttaccatgtg aattaagttt tggtattcca tatattcctt attcctagga
     4261 gctccaaatg ataaataacc tggccaacag atacttgtct tttcatttta ggacattttt
     4321 acttgtttgt aaatgattag ttgaaaataa gagcattgtt ttggagtgtt agaggcagca
     4381 gccaagggca tagcagtgtt tagagaagag ggcactgtca tgtatgtggc tttctaagca
     4441 catttttaaa tattaacttc tgttagtatt tgcttaccac attataattt tgatttatat
     4501 tttcaggttt gtcctgaaat cttaaaaaaa aacacaactc atagaaaaac taaatgtttc
     4561 attattaaaa atatctccat ctcagggtct gatgtgtagc tcataatgtt atttaataag
     4621 tcaagtattt gaaggggcag gaatgcattc ccttgtgaac tttatagtga caaatcattt
     4681 ctccattaaa agctaataca atttttaagc acctttagaa tagactttaa aaagacacac
     4741 agagaattct ttcttacttg aactgctcat aagcaagtaa gaggaaagtg ctatggactc
     4801 atgtatagaa ttcttgtcct tgtgtgtgga tccttcttga gtacaggtgt caggcttatg
     4861 ataaaagggg tagatcagga actctgtctt catggttgga gcaacttagt agatgtgtta
     4921 cagttgggaa gatggaattt cctctggccc aggtatccca gtaatgcctg agtagttcag
     4981 gtattacaag gagtctgtgt tattgtgtta ctgttctgtg gatgtcaaac cctctgtttt
     5041 ccacacaata taaagcacca gcacagagca tagtattgca gaccagtcag cttaggtctg
     5101 gaattactgc tcagccccta cacccagccc taccccacac ctctggtaaa acaaacaaac
     5161 aaaaaaccac caactaaccg aaaaaccccc aaatctactt ttgatcaaga ggatgtgctc
     5221 aagaagaagg aatacacaga ggaagtgtac ttggttttta ttctgaggaa ggtggtaatt
     5281 ttatcttttc ctcattggct ggggggtctg acctctgcta gtctaaaaga atgagtgcat
     5341 aagaaaatgg aggaagggga aaggagttac tgctccaagg aggaaagggt cattgcttca
     5401 ggctatcaaa ttcttagaat agaaatagga cctttgagta aataaaagtt ttacttgaag
     5461 tgcggtgggg gaggattaac tcctaaacac aaattgtata gtatttgata gaaaaaaact
     5521 catattttat atttcttaca aatccctctt tttttcttct tttaacatac tcttttcttc
     5581 aaactcatta tggttttctt tttctgctct atcttggaat aagaaactgc catggggagg
     5641 gagtagtacc tgtttattaa cagttgactc aactgtcttg tattaggttc cgagtataaa
     5701 aaattgttac atctgtttta gcatggctta aactgagtcc accttcctaa tcgtagttcg
     5761 cctgtcagga gattgaccta cctgcttttg aatgtccatg gaatcattgc cctttgatgt
     5821 gtgaaggagg agcttgtctc ccttcaggtg aagttcccag ggtgtggggc tagaggaagt
     5881 attacagtgt tgctatgtgg attttttaaa atgtaatatt tgcctgtaat atttgtagca
     5941 tgcatttagg cacttgtgaa tctgctctga ctattggtac acactagtca attctgatag
     6001 cttgttaaga cttttttgtt attattacta tttttttttt acctattttc agagtgttta
     6061 ctgtgaatta aaatttgtta taccactgcc aaaaaataaa gtttactttg ggacacattt
     6121 attttacatg ttgtctgagg ccgactttgt attacaaagg cagagttgaa tagcgacaga
     6181 gatcaggaga cctagaaatt tggtatttgc tatttggttt ctttgtagat tgtttccagc
     6241 atctagatta gaagaagaca aacatttttg agtttttgga agctttcttt cttggaccac
     6301 ttctttcctc cttgttaccc tcttaggttt ttattctatc ttttaaatat tttacttact
     6361 gaacttcacc ctatatacaa ataaaatgtt ccacataaac actcctaata gctcttaccc
     6421 tacaacagct acatttgttc ttcatacagc tgcagtagac cttttagatg ctgtgaagaa
     6481 actggctaaa gggcatcttt atctctttca gcctgggctg gatacaattc ttcacattag
     6541 tccccccttt ctcctgtctc ttcctttgat gctttctgta gctcccttct actactatct
     6601 catttctgta cagcagtcct agaaatgtga ctagtcactg tcaccctaaa tcagtatgcc
     6661 cacttcctct tgccaaccca ctgtttctcc ctataactca accctcctag aaatcacatg
     6721 gttttacttt caacaataat tatcttccaa gtctcttaaa gaatgcagac agcaattgaa
     6781 tgatcgattg cagcttatta agactccccc tgctatgtga cctgaagatt ccctatttaa
     6841 ca
//
