LOCUS       XM_039088768            1736 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sorting nexin-1-like (LOC102549158),
            mRNA.
ACCESSION   XM_039088768
VERSION     XM_039088768.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088768.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1736
                     /gene="LOC102549158"
                     /note="sorting nexin-1-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 3 long SRA reads, 22 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102549158"
                     /db_xref="RGD:7624393"
     CDS             16..1341
                     /gene="LOC102549158"
                     /codon_start=1
                     /product="sorting nexin-1-like"
                     /protein_id="XP_038944696.1"
                     /db_xref="GeneID:102549158"
                     /db_xref="RGD:7624393"
                     /translation="MPAGMPLCSAYATVELSLDSTQNNQKTMPGKTLIPHPTQEATNS
                     PKPQPSYEELEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAV
                     KRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAA
                     LERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTRALSGAGLLKMFNKATDAVSKMT
                     IKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSS
                     EDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMK
                     TWQRWQDAQATLQKKRESEARLLWANKPDKLQQAKDEITEWESRVTQYERDFERISTV
                     VRKEVTRFEKEKSKDFKNHVIKYLETLLHSQQQLAKYWEAFLPEARAIS"
ORIGIN      
        1 aggttctcct gcaccatgcc tgctgggatg ccactttgtt ctgcctatgc cacagtggaa
       61 ctatccctgg atagcacaca gaataaccag aagacaatgc caggcaaaac acttattcct
      121 catcctacgc aagaagccac aaattctcct aagccacagc caagctatga agagctggag
      181 gaagaacagg aggatcagtt tgatttgaca gttggtatca ctgatcctga gaagatcggg
      241 gacggtatga atgcctatgt agcctacaaa gtcaccacac agacaagctt accgatgttc
      301 agaagtaggc agtttgcagt gaaaagaaga ttcagtgact ttctgggtct ttatgagaag
      361 ctctcagaga agcactccca gaatggtttc attgtccctc ctccacctga gaagagccta
      421 ataggaatga caaaggtgaa ggttgggaag gaagattctt cttctgcaga gtttcttgag
      481 aaacggaggg ctgctttgga aaggtacctt caaagaattg tgaatcatcc taccatgtta
      541 caggacccag atgtcaggga gtttttagaa aaagaagagc tgcctcgagc tgtaggtacg
      601 cgggctctaa gtggtgctgg tctccttaag atgttcaaca aagctacaga tgcagtcagc
      661 aaaatgacca tcaagatgaa tgaatcagac atttggttcg aggagaagct ccaggaggtg
      721 gagtgtgagg aacagcgcct acggaagctg cacgctgtgg tggagactct agtcaaccat
      781 aggaaagaac tagcactgaa tacagccctg tttgccaaga gtctagccat gcttggcagc
      841 tccgaggaca acacagcact gtctcgagca ctctcccaac tggctgaggt ggaagaaaag
      901 attgagcagc tccaccagga acaggccaac aatgacttct tcctcctggc tgaactcctg
      961 agtgactata tccgcctcct ggccattgtc cgagccgcct tcgaccagcg catgaagaca
     1021 tggcagcgct ggcaggatgc tcaagccaca ctgcagaaga agcgggagtc tgaggctcgg
     1081 ctgctgtggg ccaacaagcc tgacaaactg cagcaggcta aggatgagat tacagagtgg
     1141 gaatctcggg tgactcagta tgaaagggac tttgaaagga tttcaacagt tgtccgaaag
     1201 gaggtgacac gatttgagaa agagaaatcc aaggacttca aaaaccacgt gatcaagtac
     1261 ctggagacac tcctgcattc ccagcagcag ctggcaaaat actgggaagc cttccttcct
     1321 gaggccaggg ccatctcctg agggaccaag gagaccagag cctaccttcg tgacgctgcc
     1381 tttttatata ctgtcctcct ccccttgatg gaccccaact gatacccctg ccttggctgg
     1441 acttagccct tccactctgc cccacagaca aactgttccc agttactcta accaacattt
     1501 catttagctt ccacatatat tttcttacct aagagaatag tttcctgctt taagcaaaag
     1561 acctacaata ggtggtggag ttataggtta ggggtggaac agtgatataa atatataaat
     1621 acaaatgtat atttttcagg atgtggttta ggaactggga ataacgtttt ctgttactcc
     1681 tgatggtgcc atgaaagatt atgtaataaa atatttgaaa atcaaaaaaa aaaaaa
//
