LOCUS       XM_039108945            1711 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus low molecular weight phosphotyrosine
            protein phosphatase-like (LOC102549052), mRNA.
ACCESSION   XM_039108945
VERSION     XM_039108945.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108945.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 7% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1711
                     /gene="LOC102549052"
                     /note="low molecular weight phosphotyrosine protein
                     phosphatase-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 ESTs, 2 long SRA reads,
                     8 Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:102549052"
                     /db_xref="RGD:7727476"
     CDS             1..822
                     /gene="LOC102549052"
                     /codon_start=1
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase-like"
                     /protein_id="XP_038964873.1"
                     /db_xref="GeneID:102549052"
                     /db_xref="RGD:7727476"
                     /translation="MRLEEGLLFSAFRVTWALARRGDLSLSLSLSLPPSLSLSLVVCH
                     HYHHQHHHNHHQHHHHHYYHVITISITLTTGGKSSPRNIFPSVLLCLSHLNRFYNFLC
                     LFKSSWRQGLHRNIAEVGSKSVLFVCLGNICRSPIAEAVFRKLVTDENVSDNWAIDSS
                     AVSDWNVGRPPDSRAVSCLRNHGISTAHKARQITREDFATFDYILCMDESNLRDLNRK
                     SNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEVVYQQCLRCCKAFLEKTH"
ORIGIN      
        1 atgcgactag aagagggctt gctattttca gcttttagag tgacttgggc tttggcaagg
       61 aggggagatc tctctctctc tctctctctc tccctccctc cctccctgtc tctctctttg
      121 gttgtctgtc atcactacca ccatcagcat catcacaatc accatcagca ccatcaccat
      181 cattactatc acgtcattac tataagcatc acactcacca caggagggaa gagctcacca
      241 cggaacatat tcccatctgt gcttctgtgc ttatcacact tgaataggtt ttataatttt
      301 ctttgtctat ttaagagttc ctggcgccag ggtctgcacc gaaacatagc agaggttggg
      361 tccaagtcag tgctgttcgt gtgtctcggt aacatttgcc ggtcacccat tgcagaagca
      421 gtgttcagaa aattggtaac tgatgaaaac gtttcagata actgggccat tgacagcagc
      481 gccgtttccg actggaacgt gggccggccc ccagactcaa gagctgtcag ctgcctaaga
      541 aatcatggca ttagcacagc ccataaggca agacagatta caagagaaga ctttgccaca
      601 ttcgattata tactgtgtat ggatgaaagc aatctgagag atctgaatag aaaaagtaat
      661 caagttaaaa actgcaaagc taaaatcgag ctacttggga gctatgatcc acagaagcag
      721 ctcattattg aagatcccta ttatggcaat gactctgact tcgaggtggt gtaccagcaa
      781 tgccttaggt gctgcaaggc cttcctggag aagactcact agctggtcct aaccaccacc
      841 actgagcaac ccactcctca gtgctgtgcc caagggtggt ggcagtcctt agccccatac
      901 cccacctctc ttttcagctg acttactgta tatctttaaa ataattgtag gtggaaatca
      961 ggcatttgtt cagaaggata aaaacatttg aggcagacat ttgaggtgtg gctcagtatt
     1021 cttagactaa caaaagctct ggcctcgcca taattacaaa atagtggaac gagcaactgt
     1081 ggaacaaaag aaaacccaat aaagtaagaa tgacccacaa ggtccagatc agcctttgag
     1141 cccagcgagc ctgggtagtc tggtctaact ggagtgtgag catggccagc acccagtgtg
     1201 ctgtttgctt gccttacact ctctattcta tattgtctct tattgtgaca atatctccat
     1261 ccatggcagc cttccattta acactgggag agtttaaacc cagacacacc gagggttcag
     1321 atatttgaga gaggagaacc tggatatgat gatgggcctg gaactccagc aggccatcct
     1381 gggctgtaca gtgactccct gtctgaaaga taaaaatgct aacagatggg agcaacaggt
     1441 tggtgaagtt aacaccttta atctcacttg gtttttgtgt agtttcttga gcttggttcc
     1501 tatttgagcc actttgcttc tttaaagaga aagtaagtgt gcttaaatag tggtgtgcgt
     1561 ttgtaagtgt tctctcatca acattttaca aagttacagg caagcatgag taattttagt
     1621 gtattttcag aaaagggacc tcaaatttat gtggatatat gtcagaaaag attgtgaatt
     1681 aaactgggat gttatcaaat acaactaaaa a
//
