LOCUS       NM_001409026            2851 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 878 (Zfp878), mRNA.
ACCESSION   NM_001409026 XM_006252956
VERSION     NM_001409026.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2851)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Jul 7, 2022 this sequence version replaced XM_006252956.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2507154.1,
                                           SRR26643288.55295.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840119, SAMN16676806
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-135               JAXUCZ010000016.1  17902367-17902501   c
            136-262             JAXUCZ010000016.1  17897014-17897140   c
            263-323             JAXUCZ010000016.1  17896151-17896211   c
            324-2851            JAXUCZ010000016.1  17890884-17893411   c
FEATURES             Location/Qualifiers
     source          1..2851
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..2851
                     /gene="Zfp878"
                     /note="zinc finger protein 878"
                     /db_xref="GeneID:102548917"
                     /db_xref="RGD:7600751"
     exon            1..135
                     /gene="Zfp878"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..1899
                     /gene="Zfp878"
                     /note="zinc finger protein 709; zinc finger protein 490"
                     /codon_start=1
                     /product="zinc finger protein 844-like"
                     /protein_id="NP_001395955.1"
                     /db_xref="GeneID:102548917"
                     /db_xref="RGD:7600751"
                     /translation="MESVTFEDVAVNFTLEEWTLLNPSQENLYRAVMRETIRNLHDIG
                     QKLGEQNSENAYKSPGGNRRYQVVEKLCEYEEDSQWEEIFSEIPDPVSQKTGKNPCGS
                     HVCGEGTCGSHVCGEGTCGSHVCGEGTCGSHVCGGGTTGHSSLNVSFGGQTRCKTHAY
                     KEQGEKPCKYKDDGVAFGSPQSFLKHEQFYAQEKPYVCKQCDKAFKYLSSLQNHKRTH
                     TRERNYACKQCGKCFKRQSNVQVHERNHTGEKPYVCKHCGKAYSSYSTLQAHERSHTG
                     EKPFVCKDCGKAYTSYSTLRAHERSHTGEKPYVCKHCEKAYTSYNTLRAHERSHTGEK
                     PFVCKDCGKAYTSYSTLRAHERSHTGEKPYVCKHCGKAFTQSSYLRIHKRTHTGEKPY
                     ICKQCGKAFARSSHLQIHKRSHTGEKPYVCKQCGKAFAQSSYLHIHQRSHTGEKPYIC
                     KQCGKAFTRSSHLQIHKITHTGEKPYSCKLCGKAFTHSNYLQIHRRIHTGEKPYVCKE
                     CGKAFARSTSLHIHEGTHSGEKPFVCKQCGKAFTLSSSLRRHDVVHSEEKPYICKCCG
                     KTFDCYSSVQKHEKTHRENRLC"
     exon            136..262
                     /gene="Zfp878"
                     /inference="alignment:Splign:2.1.0"
     exon            263..323
                     /gene="Zfp878"
                     /inference="alignment:Splign:2.1.0"
     exon            324..2851
                     /gene="Zfp878"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaagttcct cacccgccat ctttcttgct ggcgacccct cagctgagga agtccaagtt
       61 gcagagtctc cgcggccgtg tgagcgtcgg ttccggagcc tctgtggagc cgcggcagcc
      121 cgaggcacag acatggaatc agtgaccttt gaggatgtgg ctgtgaactt caccctggag
      181 gagtggactt tgctgaatcc ttcacaggaa aatctttaca gagctgtgat gagagaaacc
      241 atcaggaacc tgcatgatat aggacagaaa ttgggagaac agaactctga aaatgcatac
      301 aaaagtcctg ggggaaatcg aagatatcaa gtggtagaga agctctgtga gtatgaagaa
      361 gatagtcaat gggaggaaat cttcagtgag attccggatc ctgtgagcca gaaaacgggg
      421 aagaacccct gtggaagcca tgtgtgtgga gaaggcacct gtggaagcca tgtgtgtgga
      481 gaaggcacct gtggaagcca tgtgtgtgga gaaggcacct gtggaagcca tgtgtgtgga
      541 ggaggcacca ctggtcattc atctctgaat gtgtcctttg gaggtcagac tagatgcaaa
      601 acacatgcgt ataaagaaca aggagagaag ccatgtaaat ataaagacga tggagtggct
      661 tttggttccc cccaaagctt tctgaagcat gaacagtttt acgcacaaga gaaaccctat
      721 gtctgtaaac agtgtgataa agcctttaag tatctcagtt ctcttcagaa tcataaaaga
      781 acccatacta gggaaagaaa ctatgcatgt aaacaatgtg ggaaatgttt taagagacag
      841 agtaatgttc aagtccatga gagaaatcac acaggagaga aaccctatgt gtgtaagcac
      901 tgtgggaaag cctattcttc ctacagtacc cttcaagcac atgaaagaag tcacacagga
      961 gagaaaccct ttgtgtgtaa ggattgtggg aaagcctata cctcctacag tactcttcga
     1021 gcacatgaaa gaagtcacac gggagagaag ccctatgtgt gtaagcactg tgagaaagcc
     1081 tatacttcct acaatactct gcgagcacat gaaagaagtc acacgggaga gaaacccttt
     1141 gtgtgtaagg attgtgggaa agcctatact tcctacagta ctcttcgagc acatgaaaga
     1201 agtcacacgg gagagaagcc ctatgtgtgt aagcattgtg ggaaggcatt cactcaatcc
     1261 agctaccttc gaatacataa aagaactcac acaggagaga aaccctacat ctgtaagcag
     1321 tgtgggaaag cctttgctcg ttctagtcac ctgcaaatac ataaaaggag tcatacagga
     1381 gaaaaaccct atgtatgtaa gcagtgtggg aaagccttcg ctcaatccag ttaccttcac
     1441 atacatcaaa gaagtcacac tggagagaaa ccctacatct gtaagcagtg tgggaaagcc
     1501 ttcactcgtt ctagccacct gcaaatacat aaaataactc atactggaga gaaaccctat
     1561 tcatgtaagc tatgtgggaa agccttcact cattctaatt accttcagat acatagaaga
     1621 attcacacag gagaaaaacc ctatgtgtgt aaggagtgtg ggaaagcctt tgctcggtcc
     1681 acttccctgc acatacatga aggaactcac agtggcgaga aaccttttgt atgcaagcaa
     1741 tgtgggaaag ccttcacttt gtccagttcc cttcgaaggc atgatgtagt tcactcagaa
     1801 gagaaaccct atatttgtaa gtgttgtggg aaaacctttg attgttacag tagcgttcag
     1861 aaacatgaaa agactcatag ggaaaacaga ctctgttagt gtactaaatg tgaggaaact
     1921 tagttgctct gattccttta aaatacatga catagctgac actggaaaga aacccaaggt
     1981 ttgtatccac tatgggatgc tttcattgac cacagttctt tttgatacca tgaaggattc
     2041 ccactggaga aaatctggat ataatacagg gagatgttca cttattctgc ttctttaaca
     2101 aacatggaaa aacttacact ggagagaaat cctaaatata gaatgtggaa acacttcatt
     2161 atcacttgac tttccaaaat tcatgaaaat gcgtaatccc tagcatgaga aaatgttttc
     2221 tatccattta caaatgcaaa ataacagtat agataaaaaa aacccttgac taaaactgat
     2281 acaccaaaaa tagaatcttc agatggccca catacaacaa tgcacataaa atcagaagac
     2341 taaatatgaa aaacacatac cagtttctgt tctcctgtgt gagatggcat atacctataa
     2401 ttccagtact tgggaagctc aaaactaaag attaagagtt ttgagttctg gctatatcgt
     2461 ctatccaata aaagaaaatt ttgtttgtta tttttcttct taatgatttc attcatatat
     2521 tcaatgagtt atgaacatat tccttcattt tctcacttca actcattaaa tccagctatt
     2581 gctgcacatg tgtgcatgag catagccact tcctcaagct gtcaatacct cctcagtaag
     2641 ggttgaaggg tagagatcac ctctcccatc aatgctagaa ttttgactgt cttaccccta
     2701 tgcaggtaac cataaatact gtgaattcat gaatataata gccatataat gaacaaaaga
     2761 ctgaatttta cactattccc atcctctgac ttgtattctt tctacctcct agaaacatac
     2821 ttttaataaa gtttgattgt tgtcttggtt a
//
