LOCUS       XM_039103941            5089 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus RAS-related protein 1a like (Rap1al),
            mRNA.
ACCESSION   XM_039103941
VERSION     XM_039103941.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5089
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..5089
                     /gene="Rap1al"
                     /note="RAS-related protein 1a like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     1 long SRA read"
                     /db_xref="GeneID:102548822"
                     /db_xref="RGD:7709661"
     CDS             1..807
                     /gene="Rap1al"
                     /codon_start=1
                     /product="caskin-2-like"
                     /protein_id="XP_038959869.1"
                     /db_xref="GeneID:102548822"
                     /db_xref="RGD:7709661"
                     /translation="MGECMTGLSAGDKPQTHHLDTPHTPSVEGRQESHRGLFPDKIQK
                     QQRSESRATLQRRTHGKPQKTEGREGGNPAGGGVGRRGVSARRPGQRPRRGHRTSLAA
                     GTTAERARTRVPSRGPPLTAGPAGPAGRPGSAGVAGSGLQPRPLPPARPPAAARDSRT
                     AKKRAPRCGQPAPLTRTPYSPRGPAPPPPPPPPSSRPRLGLGLCTAAAVAAASGAAAA
                     PPERARTQHAGPAPRPGLRLPGRVRNLFKGAALQRVRRNSVCRQELGPCL"
     polyA_site      5089
                     /gene="Rap1al"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgggggagt gcatgactgg actgtcagca ggagacaagc cacaaaccca ccacctcgac
       61 actcctcaca cgccctcggt ggaaggaaga caagaatcac accgtggcct ctttcctgac
      121 aaaattcaga agcagcagag atcagagtcg agagcaacgc tgcaaaggcg aacacatggc
      181 aagccgcaga agacagaggg cagggagggc gggaacccgg ctggcggcgg agtgggacgc
      241 agaggtgtca gcgctcggcg gccggggcaa aggccgcgcc gagggcaccg cacctccctg
      301 gctgcgggga cgacagcgga gcgggcgcgg acacgcgtcc catctcgcgg cccgcccctc
      361 acggccggtc ccgcaggccc cgccgggcgg cctgggtccg cgggcgtggc tggctccggc
      421 ctccagccgc ggcccctccc gcccgccagg cccccggccg ccgcccggga ctcgcgaacc
      481 gctaagaagc gggcaccgag gtgcggacag cccgcgcccc tcactcgcac cccgtactca
      541 ccccgcggcc cggcgcctcc tccacctcct cctcctccct cctctcggcc gcggctcggg
      601 ctcgggctct gcacggcggc ggcagtagca gcggcctcgg gagcggcggc ggcgcctccg
      661 gaacgcgcac gcacgcagca cgcaggtccc gccccccgcc ccgggctccg ccttcccggt
      721 cgtgtccgga atctatttaa gggagccgca cttcaaagag tcaggaggaa tagtgtgtgc
      781 agacaggaac tggggccttg cctttgaaaa agtgattaag gccaacattg agatgaaaaa
      841 ggacaaaaaa aaaaaaatta agaaagaatt ttgaagggat gcaatcctgg gacagttact
      901 agttgagtgc ctaataggtg ctccatgctg ttctaggcat atataggaaa agtcactttc
      961 tagagttttc gtcctcgtga cctaagagag ggaacatgaa cattaacaag taaaaaaaaa
     1021 aaaattcaca ggtcaccagg gaggtctttg cacgcctttg ttcatgctct gaagaaacaa
     1081 gcctagacaa cagaggctgg atgagaggaa tactcctggg ctgagagaat atcagcctca
     1141 aacacagagg tgggatgtgt ctgccatatt tcacgaatgg caaaaggcaa gagaaaggat
     1201 ggatgagcag agtctatggc caaagagcag agtagtgagg cgccgagatc tggacaaatg
     1261 gcccgaccct gtggagcctg taggccattg taatggcaac aggaagccct gaggagaggg
     1321 tgggcccaca aataactata tctagtccat tttttttaaa ggttaatatt acttagggtg
     1381 tgctctctta ctcctgtaat cccagcattt tgaaaataag aacaggagaa tcgtcacaag
     1441 tttgaggcta gcccggacta cacaatgagt ttccacaagt ttgaggttag ccaggactgc
     1501 acaatgggtt tcaggctcat ccggagctgg agtgagtctt gctgtgtgtg taaaataccc
     1561 aacagaagca tgaatgtcca cagaggaagt ctagtaggtg gctgctcatg tccaattggc
     1621 caagagtgac agcggcatgc caggtaagaa gtggttattt tattttcgat tttgtttttt
     1681 tcagttttat tacatctctt ttaataggtt cgaacttgag aaggcagagg gtagagcaaa
     1741 acaattagga atgattctta gattggggac ctgctggctg atatcacgta atgagagaga
     1801 agatggggta agagcaaagc tgggagcgaa gaaatggaga gttcaatttt ggcggggctg
     1861 gagaaagctc agcagcgatg agtatttgct tctcttgcag aataccctgg ctgggttccc
     1921 tgcacctaca cagcagctaa caacaggctg cagctctaat tccaggggag ctgaggctct
     1981 cttctggcct ccatgagtac cacatgctca tgttacacag acgtgtgtgt gtgtgtgtgt
     2041 gtgtgtgtgt gtgtgtgcaa aacactcata tacgtagaat aaaaatacgt tggggattta
     2101 gctcagtggt agagcgcttg cctagcaagt gcaaggccct gggttcggtc cccagctctg
     2161 aaaaaaaaaa agaaaaaaaa ataagttttt ttcaaaacaa aacttctatt tttcctgttt
     2221 atcatccaaa tagagatatt gaataaacaa tgcgaggtat gaatctggag atataaattt
     2281 gagatccatc aggattagat gatttgaccc tcgggatggg gagtagctgg aagagaggac
     2341 caagagaagt agaggttaaa gataagcaga gttggcagtc aggttagagg aacgtccagg
     2401 aaggaaggaa gtagttaggg agttgtttta ggaaagtcag tgacagtccc cttgcctact
     2461 gctgaaatag ctaagacagt tgagtttcaa tctctgcctc acccccgcct cacagtcccc
     2521 atccccgtca cactggttgg ttcatgctag acaaactctg ccactgagct gcacccccag
     2581 tccagagttg ggaatttaac cactaatttt ggcctgatga agactgctga ggagcttaat
     2641 gaaaaccctt tccgtgttac catatgggga aaggtctggt tagagggtaa gaatgagaga
     2701 gagtgaggag gagaggtaag gagttgcctg agcctagtag tagtagtagt gggaaggctg
     2761 tggggatcca ggaacagtgt ttaaagccaa gttacttcct tgtggcatta gagtgaaaaa
     2821 taaagttacc aagcagagac cagaggagac acctagagaa actataggaa gtaagaagca
     2881 gtgagtccta gcctggtgct gaagcagttg gtcttgaata ggaacaagga cagtaatcac
     2941 agactggttt gtagcaaagg cacagacaca agagcgcata ggcgtgtgtt tgaggtgcgg
     3001 agcagaggag acgagtgaga gctcaagtct agtgggctga gtttgacctt gtggaaaggg
     3061 cacttttcta ctgttctccc ttggagtggc accttttgtc agttttccat gcccccatct
     3121 tcacacacac tcacacccgc accacacaca catgcacgca cccacgcgcc cttgcatcca
     3181 tgcccttccc attccttgtg tatatttttt ttccagttta tactaagtgc tgtaagtgtt
     3241 gcctgcggat ggatggatga gatcagatct gacctgtgtg ctttctttta gcctctctta
     3301 acatggtggt catatatcta cactgagatc actccgcaag gtacggtccg ttgctgatga
     3361 gagtcaatgc gagaagggtg agagaggtgc ccatgtctca aatttggggg aggacaagtg
     3421 aatctatttt ataaaggaga aggtaatata attaatcact ctaatgcttc tacctggacg
     3481 aagatggaag tttagaaggt ggacgacatt gtgaagttgg tgacatcact caagcgtgat
     3541 gacagctggc tggccagtag gtcaccattt ccctttgttg cattccactt cccacatgct
     3601 gggaaggcaa ggctgaggag gacatgtgag acgggcaggc ttcagggtct gaaccaacac
     3661 tagcctagct gtcatctgtg ggaagtggct ttcggttgac cagtggcact tcccagtgtc
     3721 agcacgcgtg ttgtgtcagc agctcagact ctgcgctagg gggcccctgt cctcagccat
     3781 cctccatctt gggaaaactc tctggtgtaa cgagcagggc ctcagtgggg aggtaggatg
     3841 cagcctcagc gaagcagatg gttgggtact tgaacagcaa tctagtacag gaaggagaag
     3901 actctgagaa ttgaggaatg aatggtaatt ggattggaac cttatcttta ttctcgtaac
     3961 tttgatagag acctggcagc accttgcact acaatctccc ttaataaagg gcattaccat
     4021 gccatgaccc aactcacgtg tcctgcccca tacatattga aatctccctt tcaactttgg
     4081 aagagggtgt gttggagtag atcttcttga aactttgttc tcatcttcca gggtgagaga
     4141 ggaagaggga gaggaagaaa gacagagaca gacagacaga cagacagaca gacagacaca
     4201 gacagagaca cagagacaca gagacacaga gacacagagg cagagagaga atgagagaac
     4261 attacaggtt gacaaggtag caaaataatt ccaaggcagc tgttctagga tttcctgaaa
     4321 tagaagagtg aatatttgct agatataaag gtgaggcctg taggttcctt gtttctccac
     4381 catttttatt atgatctctt gccccagaaa aggaggaaaa caaactaaga atgagtgcct
     4441 ctcccccagc acattctaac ttggcgtatc agcatggtat cggggaggag gaatcggcaa
     4501 ctgacattta cctagtgcta actctacttg tttaaaccgt tatatgttat ctagataact
     4561 gcactgaaca ctgggataca gaggcatact gtgtctgtgt tgttatcccc attttaaaag
     4621 agaacgccat tgggctcttg tagttaggaa atgatgaggt caaactctaa aacccaaggc
     4681 ttcctggctg caaagtccac tttctttcca gttgccttgc tgaagtgcct gctctgaatg
     4741 aagaagaact gggtcctgca gtatgtccac aggaagaaga ctgtgtgtga gtgcagcctc
     4801 catgttcact gtgcctcatg ccatccctga tgtcaggggg aaatgaatgg tcatttaaaa
     4861 attccggctg gctaaagagc tggtggtttg aatgaatgca tctaattgca aaatgtgaag
     4921 gactgcccct ggtattaaaa agatggatga ttctgtgaag ggaatgtgct aagacttgtt
     4981 tgttgaaaat ggaattatta atgacttgtc agtaaattta agaatgcctt aaatcattcc
     5041 actcttactc ttttcataca aggaataaaa cagatgaatt tataaaggg
//
