LOCUS       XM_039097115            2832 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 845-like
            (LOC102548728), mRNA.
ACCESSION   XM_039097115
VERSION     XM_039097115.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 10% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-161               JACYVU010000023.1  6656813-6656973
            162-232             JACYVU010000023.1  6658063-6658133
            233-323             JACYVU010000023.1  6658536-6658626
            324-369             JACYVU010000023.1  6676687-6676732
            370-405             JACYVU010000023.1  6676734-6676769
            406-532             JACYVU010000023.1  6680162-6680288
            533-2832            JACYVU010000023.1  6681159-6683458
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2832
                     /gene="LOC102548728"
                     /note="zinc finger protein 845-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 8 Proteins, and 91% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102548728"
                     /db_xref="RGD:7537348"
     CDS             1..1635
                     /gene="LOC102548728"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: zinc finger protein
                     383-like"
                     /protein_id="XP_038953043.1"
                     /db_xref="GeneID:102548728"
                     /db_xref="RGD:7537348"
                     /translation="MGSNLASEPGYKGDRLGSKLVVKTPRSHRCHSGRPGRVSRATAG
                     IAAGGPEPPRLDPASTTLYRDRLLQNCSILFAVGLTHKPELLNFEAEQRGLEGGTERH
                     RSKYTRVLVFVPEKESQRRVTRKMTASPVNVLQGLLTFRDVTVDFSQEEWECLGSDQR
                     ALYMDVILENYNNLVFVENHRISGKNEKILYQGTKHIVHQHVNIQEKSYKCNKFGKMV
                     HESSQCIPYDTRDTAENFSKCRYGKHKDASDESSTIYRHKSGDSREEPCKFKDCVYCL
                     NLFPIISHNQRIHSYLSIQQRNHSVEKPHKCKACSKCFYQLYQVKYHYKTHIGERPYK
                     CSECHKCFSQLTHLKSHQTIHTGEKHYKCNECGKNFSRLTYLRTHQRIHTGEKPYKCS
                     ECDKRFIQKAQLTIHQRIHTGEKPYKCIECEKSFTCCSGLRKHQRIHTGEKPYTCSEC
                     KKSFTSGSDLRRHQKIHTGEKPYKCSECDKCFIQKVQLRIHRRIHTGEEPYKCSTCVK
                     VFTHLSGLRKHQKIHSTERKFPLVKNVAYALSKFCP"
ORIGIN      
        1 atgggaagca accttgcttc agaaccgggt tacaaaggag acaggttggg gtctaaactg
       61 gtggtgaaaa ctccccgcag ccacaggtgc cactcggggc gtcccgggag agtcagcaga
      121 gcaacagcgg gaatcgctgc cggcggccct gaacctccca gactggatcc tgcttcgacg
      181 actttgtaca gagataggct gttgcagaat tgcagcattc tctttgccgt gggtcttaca
      241 cataagccag agctgctcaa ttttgaagca gaacagagag gcctagaagg tggaacggaa
      301 agacacagaa gcaaatatac cagagttcta gtctttgttc ctgagaaaga aagtcaaaga
      361 agagtgacaa gaaaaatgac tgcttctcca gtaaatgtgc tccagggtct gctgacattc
      421 agggatgtaa ctgtggactt ctctcaggag gagtgggaat gcctgggttc tgatcagagg
      481 gctttataca tggatgtgat attggagaat tacaacaatc tagtctttgt agagaaccat
      541 cgcataagtg gaaaaaatga aaaaatcctc taccaaggca caaagcatat tgtccatcag
      601 catgtgaata tccaagagaa gtcctataaa tgtaacaagt ttggcaaaat ggttcatgaa
      661 tcctcccagt gtatacctta tgacacacgt gatactgcag aaaacttcag taagtgcaga
      721 tatggtaaac acaaagatgc ttctgatgag tcatcaacca tatacagaca taaaagtggg
      781 gactctagag aagaaccttg caagtttaaa gactgtgtat actgtttaaa tttgtttccc
      841 ataatcagtc acaaccaaag aatccattca tacctcagta tacaacagag aaatcattct
      901 gtagagaaac cccacaaatg taaggcttgt agcaaatgct tttatcagtt gtatcaggtt
      961 aaataccatt acaaaaccca tattggagag agaccttata aatgcagtga atgtcacaaa
     1021 tgttttagcc aactcacaca cctaaaaagc catcaaacaa ttcacacagg ggagaaacat
     1081 tacaaatgta atgaatgtgg caaaaacttt agccgactga cgtacttaag aacccatcag
     1141 agaattcata caggagaaaa accttacaaa tgtagtgaat gtgacaaacg cttcattcag
     1201 aaagcccaac ttacaataca tcagagaatt cacacaggag aaaaacctta caaatgcatt
     1261 gagtgtgaga aatcctttac atgttgctcc ggccttagaa aacatcagag aattcataca
     1321 ggagaaaaac cttacacatg tagtgaatgt aagaaatctt ttaccagtgg ctcagatctt
     1381 agaagacatc agaaaattca tactggagag aagccttaca aatgcagtga atgtgacaaa
     1441 tgctttattc agaaagtcca acttagaata catcgtagaa ttcatacagg agaggaacct
     1501 tacaaatgca gtacatgtgt taaagtcttt acccacctct caggtctaag aaaacatcag
     1561 aaaattcata gtactgaacg aaagtttcca ttagtaaaaa atgtagcata tgctttgtcc
     1621 aagttctgcc cttaaaaact attgcatact ccacactaga aaatcataat gagcatgagc
     1681 aatttctgaa atcctcttaa gtaatgttca aatcttagaa aacatcaaga atttacattg
     1741 aggaaaaatg attaaaatgt ggcaatgtat gaaatacatt attaaaacat tctacttttt
     1801 caacctcaaa cacttcataa tgaagaaaat atggaaaggc ctgaagaatg tgctgtttgt
     1861 gcagctggtt cctggagact gaaatgttct gtcctgaaga gaagctgata aaggcaggaa
     1921 atataattcc caaatggctt catgaagtct gtgaaactga cagggttcac tctactcaac
     1981 tcccataaaa aaaaaaaaaa aaaaaaaaaa actagattac aaaccaaacc accaaatagg
     2041 atgcctttta accagtagat atgccaccag ttgtacagta tgcttcaggt gtccactgct
     2101 tataaattgt tttccacgct ggttagagtt tcctgatagc aactgtcttt gattccattc
     2161 tgctgcataa gcacctcttt ccccatattt ctgtaaatag ccccaacaaa ggtcattggg
     2221 tcaacacgat agacttaggt ggcatgcata ctttgttgtc agttctcaat cccagaaaag
     2281 tctcctatac atgtcctatg cctgttcttt gttcaatcat gttcaccaga aaattaatat
     2341 taaagagaaa gcatttgatc aactaaagta gggaaagtat gtgcttactt ctccaggctt
     2401 actgccacag taatatttgg tcttgttcaa agggctcaac atagacagaa tgtagaagct
     2461 taggaaagcc agagtggaag ctactctctt tcctgcaaga gagtgtgaaa gatctatcga
     2521 gggaaaaatg aaaatacagt agcaaaacta tcagtgacag accatggttc aagtttggct
     2581 gtgtctgtgc atggctctga actcatgctt tgcaaccatg attcagtaaa ggagcaatga
     2641 cctcagtaca aatactgact gccatcatgc cttacttaag ttctgctgtg ctgtgaaaat
     2701 tctatcctac aagccccaag aagtgattga attttgttaa atcttttatt caatgcttat
     2761 attgtagaca tagcagaaag accatgaaat aaaactcagg aaaatattaa taaagacata
     2821 tattcagctt aa
//
