LOCUS       XM_006257115            5956 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retinitis pigmentosa 1-like 1
            protein-like (LOC102548506), mRNA.
ACCESSION   XM_006257115
VERSION     XM_006257115.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006257115.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006257115.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5956
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5956
                     /gene="LOC102548506"
                     /note="retinitis pigmentosa 1-like 1 protein-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102548506"
                     /db_xref="RGD:7634291"
     CDS             3745..5583
                     /gene="LOC102548506"
                     /codon_start=1
                     /product="retinitis pigmentosa 1-like 1 protein"
                     /protein_id="XP_006257177.2"
                     /db_xref="GeneID:102548506"
                     /db_xref="RGD:7634291"
                     /translation="MDTSSSSEEYMPELPRQRKASCVVIDSDSDNPHDENSAKICEIS
                     SEDESSDTDHSKGQKLPIIIIDDDDGNPGGSRDSEQKNDECQMPVLEKEGVECIGSGP
                     TSPHDVCEIWDLCGSSNQPSSEPEPEGELEPKGEPESEVKGEPKSQPKGKPKSQPKGE
                     PKSEVKGEPKSQPKGEPESQPKGEPKGEPESQPKGEPKGEPESEPKGEPESEPKGEPA
                     SEPKGEPESEPKGEPESEPKGEPESQAMGEPESEPKGEPESEPKGEPESQAMGEPESE
                     PKGEPESEPKGEPASEPKGEPASEPKGEPASEPKGEPESEPKGEPESEPKGEPESEPK
                     GEPESQAMGEPESEPKGEPESQAMGESESEPKGEPESQAMGEPESEPKGEPESQAMGE
                     PESEPKGEPESQAMGEPESQVMGEPESQVMGEPESEPKGEPESEPMGEPESEPMEEPE
                     SQAMGEPESQAMGEPESQAMGEPESQAMGEPESQAMGEPESQAMGEPESQAMGEPKGE
                     SDSEAKGEPEQEITAEEAKKKRAAYLLAQQRKRKRKNRFICMSSSKPRRKRRRANPQE
                     VPSLPSTSDNLSLSTPDEPGPSSQPVHPPKGMALRKGRGKGAKARK"
ORIGIN      
        1 gaacattgga gataaccaca gagccccaaa tacctatata gggttttgtg ggttattgtt
       61 caccttccat tctgaggatt acgcagacca agcaagcaca ttgatattag ctataactta
      121 agccttatag tctcattctt tatatggact agtctttttt aggtatttac agacagaact
      181 attttccctc tgttgtgtac aatctcagcc acaagtttgg cttctagttt tttcagagac
      241 ataaagggaa aacattggag ctggacagat tgcttagcaa ttgagagcac tgggtgtact
      301 tccggaggcc ccaggttcaa ttcccaacat ctgctttgca aactgtaatt ccagatccag
      361 gagatctgac tctcttttgg cttccttggg tatgcatttg gtgaacaggt atacacacag
      421 gtaaagtact tataaaatta atgtgcatct atacacatgg aggtaaaact catacacata
      481 ttttttttta aaaaaaaggg aaataggggt agggtggcat atgcctttaa tcccagcact
      541 tgggaggaag aagcaggtgg tggccagcct ggtctgaaga gctagttcta ggacatataa
      601 aagtatacaa gaccaagatc tggcttgaaa aacaaaaaac aaacccatgc atagtgcatg
      661 ccttttaatc caagtactcc agaggcaggt tgatctttgt gagttcgaga ccagccttgt
      721 ctacgaagta agttccagga caaccagaac tgttacacac agaaaaactt atcttgaaaa
      781 caaaacaaaa ttgggaaatg gttgtttcaa gtaaactttc agctgttttc cttactgact
      841 ttattgtgcc ccaaagccct aacttggatt tgtgcttgtt ggaatctggg agccatgaga
      901 cacaatgatt aatagttttg ggatctgtgt gttctgacat aactataagc ccagcacggg
      961 gagggtgaga caggaagatt accggaggtt caaggacatc ccaggctaaa gagtgaaacc
     1021 ctgtcttaag caacagagat ggtgtgggag gagaggttga cttcatcact agttagacag
     1081 tggtatgggg tgaagtcagg tagccattgg aacctatact tgaccctcat tgtcaaaagt
     1141 gcatcatctg tctcattcgg ctcctgcatt caaagaactg cccgacagat taaaatacat
     1201 ttctataacc ttcaaactgc ctgtaattta cctttttgtg tgttgatttt aaacaggatt
     1261 ccatgtagcc atagctgacc ttgagcttca gatcctccta tgatgttaaa gagatcacaa
     1321 gcctgtgcca ccgtgtccta ctgtttgttt ttgggttgtt ttggttttgg gttgttggtt
     1381 ggttggttgg ttggttggtt ggttggttgg ttggttttga cagagtctca ctgtatagcc
     1441 ttggctggct tcaaacttaa ccttctgaga cctggaatta caggtatgtg ccaatgtgcc
     1501 accatacctg actgaactgt tcaagagttt atttgaatct taacttttat tagttttcta
     1561 ttcagttttt ccaacattgt tcagatttgt cttgaactct cctccacatt tcaagtgctg
     1621 ggaagtatag gtatatagta ttaccccgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     1681 tgtgtgtgta aaattttgat tatttgggaa ttttccatca tgaatcctag tcatacttct
     1741 cagtcttccc agttctgctt ccctgctctt gtgacttccc ctacaaaaag aaaaaaataa
     1801 gtccagtttg tgttgcctat aatatagtca ctggggcatg gtcaaactcc cagtagccag
     1861 ccccttaaag agagtgagtc aaacactgag attaaagagg tgtgtgggct tggggtctaa
     1921 gtttctatgt tcatgcttgc tcaatgagca ttttatttcc tgaactatct tccctggccc
     1981 caacactgag tttttaattg tttagaaaca aaacttttgt ccagctgggc tcctgggctc
     2041 ctgggctcct gggctcctgg gctcctggac tcctggactc ccaggctcaa ggaatacttt
     2101 ggccttagct tcctaagtag ctgggaccag gctggcatgc tagtgccctt tgtgctgggc
     2161 tcaagtactt taaaaaaaag attttaatat ttttattttt agatttatta ggttatttag
     2221 actttatttt tagatttatt ttatatgaat gtggttttgc ttgcatatgt gtctgtgtat
     2281 cgtgtgtgcc tggtgcctga gtatgtcagc agagggcact agattaccta gaactgcagt
     2341 tatgggtggt tgtgagacac tgtatgggta ctgggaattg aacctgggtt cagaccctgg
     2401 agaaaaaaaa attggttaaa cttcccagtg cccattccaa actccagggt cctgaaccca
     2461 ggaatcctct gtaagaacaa tttctcttaa ccatggaacc aagcatctct ccagcccctc
     2521 acatactttt tttttttaaa caagacaggt ttcactatgt ggctattctg gaactcctta
     2581 tgtagattca gtagagtctg tctccctcta ctccccaaat cctgggatta aaagttttaa
     2641 aggtctgcac caccatgcct aattccccca gttttaagcc acacagaaca cctagagcaa
     2701 tgtctagcaa ctaaaagcaa atccatagga tgtttctttt gtattgtatg gccaaacaaa
     2761 tcgtgaggta tataggtgtc tgccagagga aggaacagtg taaaaagcac cggctttttc
     2821 atgtgtttgg aatgggcact gggaagttta accaaatttt tttttctcca gggtctgaca
     2881 attcttgatg ccagcaccac agttccgtgt tgctggatgg ttttttggct agtcctcttt
     2941 tatctaccgg tctaaatagt ctttttctgc aagtgttcag ggtagttgga agacaagata
     3001 gacgaacttt ttaaacattt gtgagttcaa gcaaggtagg tcacctggct tagtgtcgca
     3061 tacctttaat cccggcactt gggaggcaga ggcagaggca gaggcagagg cagaggcaga
     3121 ggcagaggca gaggcaggcg gatctctaaa ttcaaggcca gcctgctcta aagccagttt
     3181 caggacagcc aggactacac agaaaaactc tgtctcaaaa gaataaacaa aaaagaaaat
     3241 gaaaaaaaat gcaatttggt atttttcagt tactagaaag ttgctagaaa ctggacatag
     3301 tggctgcaca tttgtaatcc catgcctcca aaggcaaaga caggattacg gtgaattcct
     3361 ggcctctctg gcctacatag accagatctc aaaaacaaaa tgggcgcgtg gattgttcga
     3421 gaccttttag ccgttagctg ctggttcggg cttaagttac agctctatat tcaaatggcg
     3481 cacttgggtg atgaacagtg atacctcgta caggaagcac tggagctggt atcagaaatt
     3541 catagttcta gaattcaaat ttgctttatg atcatacgta ataggtgggg gcagaaaagg
     3601 cgggaatacg tcagttccca tgttccccgg gggcactgcc ctataaaagg cgctgctccg
     3661 tgcgcgcccg tttcataacg ctcgggggag ccgttggtgg ttgtgagctg tcgtcggaca
     3721 cgggaaatca gttatattct taacatggat acaagcagca gcagtgaaga atacatgcct
     3781 gaattgccaa ggcagagaaa ggccagctgt gtggtgattg actcggactc tgacaatccc
     3841 catgatgaaa acagtgctaa gatctgtgaa ataagcagtg aagatgagtc ttctgacact
     3901 gatcattcca aaggtcagaa gcttccaata attattattg atgatgatga tggcaacccc
     3961 ggtggttcga gggattctga gcagaaaaat gatgagtgcc aaatgccagt acttgaaaaa
     4021 gagggggttg aatgtattgg ttctggtccc acttcacctc atgatgtctg tgaaatatgg
     4081 gatctttgtg gaagttccaa ccaaccatca agtgagcctg agccagaagg ggagctggag
     4141 cccaaggggg agcccgaatc tgaggtcaag ggggagccca aatctcagcc caaggggaag
     4201 cccaaatctc agcccaaggg ggagcccaaa tctgaggtca agggggagcc caaatctcag
     4261 cccaaggggg agcccgaatc tcagcccaag ggggagccca agggggagcc cgaatctcag
     4321 cccaaggggg agcccaaggg ggagcccgaa tctgaaccca agggggagcc cgaatctgaa
     4381 cccaaggggg agcccgcatc tgaacccaag ggggagcccg aatctgaacc caagggggag
     4441 cccgaatctg aacccaaggg ggagcccgaa tctcaggcca tgggggagcc cgaatctgag
     4501 cccaaggggg agcccgaatc tgagcccaag ggggagcccg aatctcaggc catgggggag
     4561 cccgaatctg aacccaaggg ggagcccgaa tctgaaccca agggggagcc cgcatctgaa
     4621 cccaaggggg agcccgcatc tgaacccaag ggggagcccg catctgaacc caagggggag
     4681 cccgaatctg aacccaaggg ggagcccgaa tctgaaccca agggggagcc cgaatctgaa
     4741 cccaaggggg agcccgaatc tcaggccatg ggggagcccg aatctgaacc caagggggag
     4801 cccgaatctc aggccatggg ggagtccgaa tctgaaccca agggggagcc cgaatctcag
     4861 gccatggggg agcccgaatc tgaacccaag ggggagcccg aatctcaggc catgggggag
     4921 cccgaatctg aacccaaggg ggagcccgaa tctcaggcca tgggggagcc cgaatctcag
     4981 gtcatggggg agcccgaatc tcaggtcatg ggggagcccg aatctgaacc caagggggag
     5041 cccgaatctg agcccatggg ggagcccgaa tctgagccca tggaggagcc cgaatctcag
     5101 gccatggggg agcccgaatc tcaggccatg ggggagcccg aatctcaggc catgggggag
     5161 cccgaatctc aggccatggg ggagcccgaa tctcaggcca tgggggagcc cgaatctcag
     5221 gccatggggg agcccgaatc tcaggccatg ggggagccca agggggagtc tgattctgag
     5281 gccaaggggg aacccgagca agaaattaca gccgaagaag ccaagaagaa aagggctgca
     5341 tatctgctgg cacaacaaag gaaaaggaag agaaagaaca ggttcatatg tatgtcatct
     5401 agtaagccac gtaggaaacg tcgtagggct aacccacagg aagtgcccag cctgccaagt
     5461 acatctgata atcttagtct tagtactcct gatgagccag gaccatcgag ccagcctgtt
     5521 catcctccca aaggcatggc tttaaggaaa gggagaggca aaggggcaaa ggcacgcaag
     5581 taagaagggt ctttttgcaa atggggttgg ggagctccag tgtccaattt cttatgcttc
     5641 agtatattag catttactgt tcagtcctct tggagtgctt tttcccctga atactctgtc
     5701 cagaggatat cctgagtcat taccccccaa acctggactc tggataattg tcaatttctc
     5761 cttgcagcta taagagtggc tcctccccct aagtccccag ttttagagtt tttctcaagt
     5821 attgtaactt taccaaactt cttctcagta gtctgttctt aagaagactc tttatgattt
     5881 attcagagag tctatcctgg tgagtggcat gtaacagatg tttaataaat ttgttaaata
     5941 aacggcacta ttggtt
//
