LOCUS       XM_039078116            1907 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus wiskott-Aldrich syndrome protein
            family member 1-like (LOC102548459), transcript variant X1, mRNA.
ACCESSION   XM_039078116
VERSION     XM_039078116.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078116.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1907
                     /gene="LOC102548459"
                     /note="wiskott-Aldrich syndrome protein family member
                     1-like; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     42 samples with support for all annotated introns"
                     /db_xref="GeneID:102548459"
                     /db_xref="RGD:7556929"
     CDS             449..1192
                     /gene="LOC102548459"
                     /codon_start=1
                     /product="wiskott-Aldrich syndrome protein family member
                     1-like isoform X1"
                     /protein_id="XP_038934044.1"
                     /db_xref="GeneID:102548459"
                     /db_xref="RGD:7556929"
                     /translation="MGLGPVFDFSGFKKETDILNFLALLVLNVETFRMGRKEAPAART
                     PRTLGLRSRARLRCPASRHRKGGPGIRVRFPERMGAARRLCPPLPGLSARAGGWAGRS
                     EASRRAPPLPRELGGASSIPQTPPGLPTLAHSPQSGPTLREAGVRAAPAGGGCACSTD
                     ALPGLIEPSQGGHSGAPVAQSVSARYLYSSTCRAMPRLPPFKRLQDPGCRPKSPVLSD
                     ARRLPASAEDATAPAAAPARARIQPTASG"
ORIGIN      
        1 actatttaag ttccctttat gaggtgccac cgttccgtgt aaacttcggg ctccccacta
       61 tctgtataca tatgtacacg cagtggctga tcctctactg caaacagcag atacacaaca
      121 gggactgggg aacaaaattc tcctccacca cctcctccca cattggtctc ctttctaagt
      181 aaccttccta ttttttttcc tttttaaata tttatttatt ttttaagatt ttgtagatgt
      241 atttgtctgt gcatgccgca gcccgccccg gaattggagt taagaaggat tgtgagccaa
      301 gtcgactcga cgttctcggc gagagcagta ctcctaacct ctgagctcgc tcgctagtct
      361 cctcgtattt tcataaacta cattgttttt acgttctgta aagaggaaag gggcctcaca
      421 aagtgcgtag tggcccagaa gtcataatat gggcctcggt cctgtgttcg atttttctgg
      481 ttttaagaaa gaaacggata ttctgaactt cctggctctt ttggttttaa acgttgaaac
      541 ttttaggatg ggaagaaagg aagcaccagc agctcgtacc cccaggaccc tcgggctgag
      601 aagccgagct aggctccgct gcccggcctc gcgccatcgg aagggcgggc cggggatccg
      661 ggttcgcttc ccggagcgga tgggagccgc gcggcgactc tgtccgcccc tgcctggctt
      721 gtctgcgcgt gcggggggct gggccggccg gagcgaggcc tcgcggaggg cgccgcccct
      781 tccccgcgag ctcggcggtg cgagctcgat cccgcagact ccccccggac tcccgacact
      841 ggctcacagt cctcagtccg gtcccacgtt gcgggaagct ggggtccgag cggcgcccgc
      901 aggcggcgga tgcgcatgct ccaccgacgc cttgccgggt ctgatagagc cttcgcaagg
      961 cggccacagc ggagctccag tggcgcaatc ggttagcgcg cggtacttat acagcagtac
     1021 atgcagagcg atgccgaggt tgccgccgtt taaacggctt caggaccccg gatgcagacc
     1081 gaagtcccct gtgctctctg atgcccggcg gcttcctgcc agcgcagagg acgccacagc
     1141 tcccgctgct gcccccgccc gagcccggat ccaacccact gcttccgggt gacttcccag
     1201 gaccaaacgg actaggggta tgggaccctg ggtgagggat ttgccccatt ctctggcatt
     1261 agcccccttc cacaccgcct gcagctcgcc cccccccccg ccccgacagc cctcccctgc
     1321 atccggttca aggcaccctg ccctcccccg cgtttgcagt tggggacaaa cgtccgggaa
     1381 atttccattc tcccttccta aagccctgct atcactctgg aacctctggc cttctcagct
     1441 agctccggat ccagcctaga aggatgtcag gagtccctca cttcagctaa tcctcacact
     1501 cagtgacaca ccctcccata ccttccgctc actgactcaa gcccgggagg atggaggctt
     1561 aattcctcta aacaaatgca ttctaagcct ggaagtaaat gtaagcgccg tgaaaaataa
     1621 aagggttgct tattaaaaca agcaaacaaa caaacggact ggagaactga ctcggcgctt
     1681 ttaaagtggg cactgctctt gtctgcgaac cagaaattca attttcagca gccgcgtggg
     1741 gaagctctct gtataactca gctccagggg acctgctgcc gacctcctta gctaccagcg
     1801 ctcaagagca agggcacaca cttagaaagg aaaaaaaccc caacaacaac aacaacaata
     1861 acaacaacaa actaaacaaa aaacaaacaa acaaacaaaa aacacac
//
