LOCUS       XM_039087858            2051 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus noggin like 1 (Nogl1), mRNA.
ACCESSION   XM_039087858
VERSION     XM_039087858.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086028) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 21% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2051
                     /gene="Nogl1"
                     /note="noggin like 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 6 long SRA reads"
                     /db_xref="GeneID:102547753"
                     /db_xref="RGD:7502415"
     CDS             1..1233
                     /gene="Nogl1"
                     /codon_start=1
                     /product="proline-rich protein 36-like"
                     /protein_id="XP_038943786.1"
                     /db_xref="GeneID:102547753"
                     /db_xref="RGD:7502415"
                     /translation="MSVVVNSLKGHLLMDRNVGSAGPPSSLWLLALKAEKLAGCERVF
                     QLLAQALLLALGQALGELQPFDLARHGPRRPLPQQLVQLRQIVLAAGWCCPQPQDHHQ
                     GVEGDPQAGAALHASRARPGAASSSRVPGGEHAESAALPRSRVPPEAAHPKLGWRRAG
                     SMSREEKRSRSAGSRRGAEDAHELVTTPPRRSTWEGGRGRASEITPARPWGAGGAGSS
                     LLSPAAGGAGRVDEPLSSSSSSGCSASCFSVPSLRSSGSWATSLRLLRAAQPALPCGL
                     QRRWRRRRPRTLAPVCLSRRVQAFKFPALSAPSPWKPLTLSALPPPPSSPQTTTPPPT
                     PPPARSRSRTGSGLSDCTGRRGGGGGSGSAQDCAPPDPDAPGSRQSGCPPELTGGGGA
                     AAAVAAAAVALGRFPDLV"
     polyA_site      2051
                     /gene="Nogl1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgagtgtgg tggtgaattc tcttaagggt catctcctca tggaccggaa cgtggggagc
       61 gcgggtcctc ccagctcact ctggctcctg gctctgaaag ccgagaagct cgccggctgc
      121 gagcgggttt tccaacttct tgctcaggcg ctgcttcttg ccttgggcca agccctcgga
      181 gaactccagc cctttgatct cgctcggcat ggcccccgac ggccgctgcc gcagcagctg
      241 gtccagctcc gccagatagt gctggccgcc ggctggtgct gcccgcagcc ccaggaccac
      301 caccagggcg tagagggtga cccccaggct ggggcagcgc tccatgcctc ccgcgcgcgt
      361 cccggggctg cctcttcgtc ccgcgtcccc ggaggagagc acgccgagtc cgcggcgctg
      421 ccgcgctccc gggtccctcc ggaggcggct cacccgaagc tgggctggcg cagggcaggc
      481 agcatgagcc gcgaggagaa gcgttcgcgc agcgccggct cccgccgcgg cgcagaagac
      541 gcgcacgagt tggtcacaac tcccccccgc cgctctactt gggaaggcgg ccgcggccgg
      601 gcatccgaga ttactccagc gcgaccgtgg ggcgctgggg gcgccggctc ctcgctgctc
      661 tccccggctg cgggcggcgc agggcgcgtg gacgagcctc tttcctcctc ctcctcctct
      721 ggctgctcgg cgtcctgctt ctctgtgccc agcctccggt cgagcgggtc ctgggccact
      781 tctctccgtc tgctccgggc tgcacagccg gctctgccct gcggactcca gcggcggtgg
      841 cggcggcggc gtccgcgcac gttggcaccg gtttgtctgt ctcgcagggt ccaagccttt
      901 aaatttcctg cactttcagc tccatcacca tggaaaccac tgactctctc cgcgttgccc
      961 cctccccctt cttcccccca aacaacaacc ccacccccca ctcctccacc cgcgaggagc
     1021 cggagccgca cgggctcggg gttaagcgac tgcactggtc gccgcggcgg cggcggcggc
     1081 tccggcagcg cccaggactg tgccccgccg gacccagatg ccccgggaag ccgacagtca
     1141 ggctgcccgc cggagctcac aggcggcggc ggcgcggcag cggcggtggc ggcggcggcg
     1201 gtggcgcttg gcagatttcc agacttagtg taaacaaaaa tcctgagatt tttctccaag
     1261 gtacttggat ttcacaagca cacaggtttg catcatccgg ctgggtggtt tggcattagt
     1321 ttgctgtctc gtgaagatta aatgttccag agcaattttg tcactgctgg gaatcaacta
     1381 agaaaataat ttctttcagt aaagacttga gaaggtaaac ccaagtcctg ccttcctcag
     1441 acagggttga gttccaacta gtgcttacct actgtgcttt ttttttcttt tttcttttct
     1501 ccttcaaatc acctgtgggt tttttaaatg tccaatcacc ctcggtttta catttattat
     1561 tattttactg tatgtgcgtg agagttttgc ctgcatgcat agctgcttgc cacatgtgcc
     1621 tgtagaggcc gaaaaaggac acggtgtccc ctggaacatg aggcacagac aattgtgagc
     1681 cagcaggctg gatagattca actgaacagc aaagaagaat gggaacccaa gcatacttga
     1741 tgatggcttg ggtgacttgt tcatggagaa cctactgtgg gaagaccaga aggagacaca
     1801 agtgtgagac ggtgcagagc tgacttcaca ttgcagccag gacttctgca gtccccagag
     1861 gggagagatg acaagcatag gaagaaagtg cctaaagtat attggaaaga tctatagatc
     1921 actataaaat tgtcaaaatt ggtttcctta acctgtgctc ccttttgtta aacacagcac
     1981 tttctgctgg tctttaagtg ttgtctggaa ttcaggatcc attgtgacta attaaaagag
     2041 tatcagagca a
//
