LOCUS       XM_039096244            3892 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus spermatogenesis-associated protein
            31D1-like (LOC102547665), transcript variant X1, mRNA.
ACCESSION   XM_039096244
VERSION     XM_039096244.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096244.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3892
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3892
                     /gene="LOC102547665"
                     /note="spermatogenesis-associated protein 31D1-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102547665"
                     /db_xref="RGD:7632620"
     CDS             647..3652
                     /gene="LOC102547665"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 31D1-like
                     isoform X1"
                     /protein_id="XP_038952172.1"
                     /db_xref="GeneID:102547665"
                     /db_xref="RGD:7632620"
                     /translation="MRSGSVQIQEGPRFPSGPTVTSGCNRKELLKRRMKKKMALQTLD
                     DPFPDPKRSECQLTALWNLPGPTATQVPKIGLKPNGKQKQFGASEQLLCVKIPEGDLS
                     QKHSQLFWGLPSLHSESIMTTLLVPVSSYSPEPCLVLFNGVCKAATAPVLSHGLQALP
                     QSLTLVQPQPFPKLAPQPLTLSEGKPQAHTQSPLSAMVLPAIPCGGDSYLQIPQSKPV
                     SNALSRKGHLQCHFLQNPQGCLWDLVPECQQYETTFLPVHGFPLGSQPPQACVSIPGS
                     GLFHLSSEHQNNVDPYGSNNLIPLCCFAPCDGTGTLEVMDAQFKPTEAPSHGYKCARP
                     QCCAQWGNICADPRPGELSHLENFCVRVPMKPQLRKDVAKNLGQILGKCPLDCPQVIS
                     GCYILDKAIPETEGELACHPRTGLENGRFSISRKNLDQRYTRSILRLHMSRKYWQITM
                     NRIPIVVCCSWLAEDASLWSSPPGKIHCDTTLPEISFLDLKTQKMLEAHLIRFRVSQQ
                     WGLPIKVIESIKFYILREAKTWPLPQFDLPLSLSSIPGLDLKSNFPSPFRGSFDPLHG
                     DSVLTADHSLTLSHVDPEGEGSLRRSVSGPASEVTETVQMVQNYRSRDLDVNQSEASL
                     QGCPIQGQPTKEEVARSESEDEVACSSHLHSSSKQSVELHPKYMVTPDMLKERLKARE
                     VSAVLSGSSSSTNSESSVKKYEDVSKPSSTVAKGQDPSRTSVPEDPTVLDFKEELFKE
                     LRSTLEDQPQSQPEGWGSRSSFATDSFSGYSPSSSNTASSVDLSILRDVQGHMYNAGI
                     SVAPWQEPRVFKQILKNFTPALPVFRKENDRHDPQELETSKARKKSQPMKEKSDRKEH
                     PPASYFRKKIGQFFQWLYSSKDSTRHRSEKDRALFMSCGPPEAHELMASLGKLLEDKL
                     LCGQKSEFLEWSQKTLSAQPELKGQPSNLGAAAALHKEEANNCSCPQTAITPDPSHEM
                     SLRRRPQHVSFEHSPSAPENLSSVQAPLA"
ORIGIN      
        1 acacagacac acacatacac atacacacac actgacacac acagatacac agtgatacac
       61 acacacactc acacacacac tcacacacac acacaaacac acacacacaa acacacacac
      121 tgtgaccctg gccagagagg gagcatacag ggagcagaat gggagtagag cagcaggctc
      181 gggcagcggg ctccgctggg acttggaagt ggggtggtat caggctcacc ctcctccccg
      241 ccctcacaaa ccctctatga ctcctccctg ctctgtgatg cagcgctgct gctgacagtg
      301 aggcccacac aacctcagag cccaaggcag ctgtgcgagt cacactatgc ggaaggttct
      361 ctccattctg agtagcgctt acggaatcgt ggtccagctt tggctcaatg ctcttggaca
      421 cgggcccact gtaccttcct gagtgcagga gctgcttctc ctgtgcctgt cacacctcat
      481 actgacttca ttttatcgct gtggaaactg caagacctca gaaaggtgag gcaccggacg
      541 gtgggctccc tgaagcgagt cttggttggg tgagtttagt gtttgtctca caacaatgtc
      601 tgaagtggga tgctgaggag agaagagaac gctgcttccc tagggcatga gatctggcag
      661 cgtgcagatc caagaaggac caaggtttcc atctgggccc acagtcacct ctgggtgtaa
      721 ccgaaaggag ctcttgaaga gacggatgaa aaagaaaatg gctctccaga cgctggatga
      781 cccttttccc gatcccaaga ggtcagaatg ccagctcaca gccctgtgga acttgccagg
      841 tccgactgcc acccaggtcc cgaaaatcgg cttgaagcca aacgggaagc aaaagcagtt
      901 tggggcttct gagcagctcc tgtgtgtgaa gatcccagag ggggacctga gccagaaaca
      961 cagccagctc ttctggggtc tcccctccct gcacagcgag tccatcatga ctactctcct
     1021 ggtccccgtg agcagctact caccagagcc ttgcctcgtg ttgttcaatg gggtctgtaa
     1081 ggctgctaca gccccagtcc tgagtcatgg tctccaagcc cttccccagt ccctcacctt
     1141 ggtccaacct caaccttttc ctaagttagc tccccagcct ctgactcttt ctgagggaaa
     1201 gccccaggcc cacacgcaat ccccactgtc tgccatggtg ttgccagcta taccctgtgg
     1261 aggggatagt tacctccaga taccacagag caagcctgtc tccaacgccc taagcaggaa
     1321 aggacactta caatgccact ttctgcagaa tcctcagggc tgtttgtggg atttggtccc
     1381 tgaatgccag caatatgaaa ccacctttct tccggttcac ggtttccccc tgggcagcca
     1441 gcctccccag gcctgtgtct ccatccctgg gtctggcctt tttcatttga gcagtgaaca
     1501 tcagaacaac gtggaccctt atggatcaaa caacctaatc ccactctgtt gcttcgcacc
     1561 ttgtgatggg acaggaacgc tggaagtgat ggacgctcag ttcaaaccaa ccgaagcacc
     1621 ttcccatggc tacaaatgcg ctaggcctca gtgctgtgca cagtggggca atatctgcgc
     1681 tgaccccagg cctggagaac taagtcactt ggaaaatttt tgtgtgaggg ttcccatgaa
     1741 gccacagcta agaaaggatg tagccaagaa cctcggccaa atcctaggaa aatgcccatt
     1801 agactgccca caagtgatct caggatgtta tatactggac aaggctatcc ctgagacaga
     1861 gggggaattg gcatgtcacc caaggactgg cttggaaaac ggacggttta gcatctcaag
     1921 gaagaacttg gaccaaagat acacgagaag catcctgagg ttacacatga gcaggaagta
     1981 ctggcagatc actatgaatc ggatccccat cgtggtgtgc tgctcatggc tggctgaaga
     2041 cgcatctctc tggagctcac ccccgggaaa gatccactgc gataccactc ttccagaaat
     2101 atcttttctt gatctcaaga cccagaagat gctggaagcc catctcataa ggttccgcgt
     2161 gagtcagcag tggggcctcc ctatcaaggt tattgaatcc ataaaattct atattttgag
     2221 agaagcaaag acatggcccc ttccacagtt tgatctcccc ttgtcgttaa gcagtattcc
     2281 tggcctggat ttgaaaagta actttcccag tcccttcagg ggaagctttg accctctcca
     2341 tggagactca gtccttaccg cagaccactc tctcaccctc tcacacgtag accctgaagg
     2401 agaggggtcc ctgaggcggt cggtctctgg ccctgcctct gaggttacag agacagtcca
     2461 gatggttcag aattacaggt ccagagacct ggacgtgaat cagagcgagg cctccctaca
     2521 aggctgcccc atacagggtc agcccacaaa ggaagaagtg gctaggtctg aatcagagga
     2581 tgaggtggca tgttcttctc atctacactc ctctagcaaa cagagtgtag aactgcatcc
     2641 aaagtacatg gtgacacccg acatgctcaa ggagagactc aaggcccggg aggtgagtgc
     2701 tgttctgtca gggtcttctt ctagcaccaa ttcggaaagt tccgtgaaga agtatgaaga
     2761 tgtgagtaaa ccgagctcta cagtggccaa ggggcaggac ccatcaagga catcagttcc
     2821 tgaagatcca acagtgttgg actttaagga agagctgttt aaggagctaa ggtcgacgtt
     2881 ggaggatcag ccgcaaagcc agcctgaagg ctgggggagc aggtcatcct ttgccacaga
     2941 cagcttctcc ggctactcac cttcttcttc caacactgcg tccagtgtag acctctccat
     3001 tctcagggac gtgcaaggcc acatgtataa cgcaggaatc agtgtggctc catggcagga
     3061 gcccagggtc ttcaaacaga tcctaaagaa tttcacacca gcgttgccag tcttcaggaa
     3121 agaaaatgat agacatgacc ctcaggaatt agagacatcc aaagcaagaa agaagagcca
     3181 acccatgaag gagaaatcag acaggaagga acatccccct gccagttact tcagaaaaaa
     3241 gataggacaa ttttttcagt ggctttattc cagcaaagac agtacaagac atagatcgga
     3301 gaaagacagg gctctcttta tgagctgtgg gccccctgaa gcccacgagc tcatggcgtc
     3361 ccttgggaaa ctcctggaag ataagctgtt gtgtggacag aaatctgagt tcctggaatg
     3421 gagccagaag accctgtcgg ctcagccaga gctcaaggga caaccttcca accttggggc
     3481 tgctgctgcc cttcataaag aagaagcaaa taactgctcc tgtccccaga cagccatcac
     3541 ccctgatcca agtcatgaga tgagccttag acggagaccg caacatgtat cttttgagca
     3601 ctctccctcg gctccagaga accttagttc tgttcaggct cccctcgcat gaaggtacgt
     3661 cctatacccc cccgctcccc acatctgcca caggcatggt gacttttcac ctgaaccttc
     3721 tgtagaaagg gtgaaggaaa aaagctccca cgatggaatc tagtctttgt ttaaagtttt
     3781 gtttttgttt ttgttttttt tttttttttt gaaaatactt tcagagccat acaccctgtg
     3841 atgagaatta atctatttaa caaaaccaag aataaatgtt ttttttttct ga
//
