LOCUS       XM_039097433             687 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus prostate-specific antigen-like
            (LOC102546874), partial mRNA.
ACCESSION   XM_039097433
VERSION     XM_039097433.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 6% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-177               JACYVU010000033.1  18305299-18305475   c
            178-178             "N"                1-1
            179-394             JACYVU010000033.1  18305083-18305298   c
            395-531             JACYVU010000033.1  18304834-18304970   c
            532-687             JACYVU010000033.1  18303037-18303192   c
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..687
                     /gene="LOC102546874"
                     /note="prostate-specific antigen-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     Proteins, and 20% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:102546874"
                     /db_xref="RGD:7667275"
     CDS             <1..687
                     /gene="LOC102546874"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:469..471,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: kallikrein-2-like"
                     /protein_id="XP_038953361.1"
                     /db_xref="GeneID:102546874"
                     /db_xref="RGD:7667275"
                     /translation="SLSSHPFLSFHPFLLSFSLLPRCPACSFSLISASPSHNKVRLGQ
                     HSLDADGDTGQYVPVXHSVPHPLCNRSLRMPTFLSPDADNSHNLMLRQLREPANTTEA
                     VRVTEEPTEEAKLGSCCLASGWGSTRPDKSLSAKMLQCVDLTLMSSDVCKDAYSXRVT
                     ELMLCAGHQEGSIDTCIGDSGTTLLCDRMLQGITSWGGNPCAFPKKPSIFTKVSKCIS
                     WIKANLQIIP"
ORIGIN      
        1 tctctttcct ctcatccatt tctttccttt catccatttc tcctctcgtt ctcccttctg
       61 cccagatgcc ctgcgtgctc cttctccctc atctctgctt ctccctcaca taacaaggtg
      121 aggctgggtc agcacagcct ggacgctgat ggagacactg gccagtatgt ccctgtanga
      181 cattctgtcc cacacccact ctgtaacagg agcctccgaa tgcccacgtt tctcagcccg
      241 gatgctgaca acagccacaa cctgatgctg cgtcagctga gggagccagc caacaccaca
      301 gaggctgtga gggtgactga ggagcccact gaggaggcta agctggggag ctgctgcctg
      361 gcatccggct ggggcagcac caggccagat aagtctctaa gtgcaaagat gctgcagtgt
      421 gtagacctca ccctcatgtc cagtgatgtc tgtaaggatg cctattcata gagggtgaca
      481 gaactcatgc tgtgtgctgg acaccaggaa ggcagcatag atacctgcat aggtgactct
      541 ggaaccacac tcctctgtga taggatgctc caagggatta catcatgggg tggtaacccc
      601 tgtgcctttc ctaagaagcc tagcatattc accaaagtgt caaaatgcat aagctggatc
      661 aaggccaacc tgcagatcat cccatga
//
