LOCUS       XM_039099370            1308 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus HLA class I histocompatibility
            antigen, A-24 alpha chain-like (LOC102546590), mRNA.
ACCESSION   XM_039099370
VERSION     XM_039099370.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099370.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1308
                     /gene="LOC102546590"
                     /note="HLA class I histocompatibility antigen, A-24 alpha
                     chain-like; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 86% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102546590"
                     /db_xref="RGD:7624899"
     CDS             1..936
                     /gene="LOC102546590"
                     /codon_start=1
                     /product="patr class I histocompatibility antigen, A-126
                     alpha chain-like"
                     /protein_id="XP_038955298.1"
                     /db_xref="GeneID:102546590"
                     /db_xref="RGD:7624899"
                     /translation="MAANSSHWLQTFNTVILEPGMTEPRLIQVSYVDSIQFQGFDSQA
                     PNASMQPRAAWIEQEPPEYWEKETTQVVSLTLSKGRILRYIANENRHSRNDYRTLQEV
                     FGCNLANDGTFLRGNYRLTYYDYDYVTLNEDMISWRAEGEIAKRWLSIWETEGVGESW
                     MTYLRGTCSERLLRFLELGKKTLLRSDAPKTHLTHQVRPDGNVTLRCWALGFYPADIT
                     LTWQRDGKNHTQDMELPDTRPAGDGTFQKWAAVMVPSGEEQRYTCHVHHEGLPEPLTL
                     KWEPSTTIPIVAILIGLIVVTLVIGTVVILRVWKK"
ORIGIN      
        1 atggctgcca acagttcaca ctggctgcag actttcaaca ctgtgatttt ggagcctgga
       61 atgacagagc cccggttgat ccaggtcagc tatgtagact ccatccagtt tcagggattc
      121 gacagccaag ctcccaatgc gagtatgcaa cctcgggctg cttggataga gcaggagcca
      181 cctgaatatt gggagaagga gacaacacaa gtcgtgagcc tgacactgtc aaaaggacgg
      241 attcttaggt atatagcaaa tgaaaatcga cacagcagga atgattatcg caccctgcag
      301 gaagtttttg gctgcaactt ggcaaatgat gggaccttcc tccgaggtaa ttaccggctc
      361 acctattatg actacgatta cgtcactctg aatgaggaca tgatctcttg gagagcagaa
      421 ggcgagatag ctaaacgttg gttaagcata tgggaaaccg aaggagtggg agaaagctgg
      481 atgacttacc tgagaggaac gtgctcagaa aggcttctta gattcctgga acttggaaag
      541 aagactttgc tgcgctctga tgcccccaaa acacatctga cccaccaagt aagacctgat
      601 ggcaacgtca ccctgaggtg ctgggccctg ggcttctacc cagctgacat caccctgacc
      661 tggcagaggg atggcaaaaa ccacacccag gacatggagc tgccagacac caggcctgca
      721 ggggatggaa ccttccagaa atgggcggca gtgatggttc cttctggaga ggagcagaga
      781 tacacatgtc atgtgcacca cgaagggctc cctgagcctc tcactctgaa gtgggaacct
      841 tcaacaacca tccccatcgt ggcaattctc atcggcctga ttgttgtaac attggtgata
      901 ggaactgtgg tgattcttcg ggtatggaag aaataaaggt aaggaaaggg cagggtctga
      961 gttctttctc ccttgaaaat ccaaggccaa gacataaatg taccctgcct cattccagga
     1021 aagaggtatc cacagaggca ctggggaccg tgggctgaca ctagctctat cataaagcat
     1081 aaaggaaata atagaaagat cctctgccct tgtgatgggt gtgatggaga cctgattcag
     1141 atttctacag agagatgtca caaagatggt ccctgctcag gacagaccta cagaaggcca
     1201 gttagtcctc cttacatgaa atcgtacatt gtgttctctc ctcagtccac ggacttcagt
     1261 cacagtttta gaagctcccc tggcacttga ccaggacatt cctcccat
//
