LOCUS       XM_039096336            4762 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102546342
            (LOC102546342), transcript variant X1, mRNA.
ACCESSION   XM_039096336
VERSION     XM_039096336.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096336.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4762
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4762
                     /gene="LOC102546342"
                     /note="uncharacterized LOC102546342; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102546342"
                     /db_xref="RGD:7579019"
     CDS             1252..2181
                     /gene="LOC102546342"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 31-like"
                     /protein_id="XP_038952264.1"
                     /db_xref="GeneID:102546342"
                     /db_xref="RGD:7579019"
                     /translation="MLYSTGQWAVSCTAIKKMERFFNLMNSIIYSWVSPSTIDTAMDM
                     IIAIICGAGLYFLLTPFLTDLPVSPCESEKDITEDVKMRQRQTRKKIATLKGCRDAAK
                     NVEETKTPSQPMKMEQLLQDSTPHPWLNRLQKMEHLLIFQPLSHLNCLEYLIQKEFSH
                     IFWGISTLFSESVLAAPNILRNPSLAQHKTLRFHDACRPAAQDPSREQRPPECSQEQP
                     LPAQLVTPSSLAVTKAQLIQIFPSSTPIKTPPCFKRQAFGKPRPTSDKGIPVSLLMEN
                     HACQHGQYWKHTKGDPRTSGSLYETHSKLDPKQ"
ORIGIN      
        1 actgctgctc ttactgggct atacattgct acctattcag ttggagcccc gggtcagtcc
       61 aggtatagtc tttgggtagt ggcttagtcc ctggaagctc tggttggttg gcatttttgt
      121 tcatacccac atgcattcta attattagga catgaatttc attatcctta gcgttctatt
      181 cctgaagacc atcaaactac attgtatgtg attatattaa aaaatgacaa agctaaaact
      241 aggagaaaaa tggaagttta caggagtaga gctgtgatca cataatggac aaatattagt
      301 ctacagagaa gcagaacccc aaaaagaatc cctaagagaa aaacacgagt tccacacaga
      361 attgcatttt ctcaaaaacc aagaacctga tggactcagg gagatatcct tccagaagaa
      421 aaggtaaagc gtaaatttgt ggtttcttca gagatccagg aaggtaataa taatgttttg
      481 ctgggctgac catgaagaat gctttgcttc agcagacaca taaaacagta tttggctaaa
      541 gcaaacacag gtaaaaggtt gtttttctat actaaaccca tgaaaggaca cgtgatgttt
      601 agaaggaaca ttaatatgac cctagacaca atgggatctc tgaatttggt ccaccttaca
      661 ttgcattgct gatttcctcc tgtggatcct tctgagaaga ctcaccaaag aacctggagg
      721 attcttgctc tgtcattaga cttggacccc atttgtgata cccccagatt cttctgaata
      781 gaactaaccc tgttgattca tgtgtggcac ctgtgagtag atgggactga agctgctaac
      841 acaggtttgt tgtttattag ggaactggac tgagtacaag gaagattgga atgtcccaaa
      901 agcactattt ccaatcagct ccctgtcccc catatcctaa taaaattcct ctttcactgg
      961 tgggtggagg gtcagagggg agggtgaaat cctataaaag taggttgagc aaaatatatg
     1021 cctacaccaa gaaagactga tgctcaaaaa gaaggaacaa aatatggaca gaggtctatt
     1081 tgtgcctgat acagcaacag gattaggaag aagggaaagg gaaaagacac agcaggtaac
     1141 tctggcatga aggctgggga ggggcactgg caccctctcc cctggcagga gccctttgtg
     1201 atatggagac cacagctgtg tgatgtggcc tgagccccct tgaaaagtca catgctatac
     1261 agcacaggtc agtgggctgt gagctgcact gcgattaaga agatggaaag atttttcaat
     1321 ctgatgaata gcattattta ctcatgggtg agccccagca cgatagacac agcaatggac
     1381 atgatcattg ccattatttg tggagctggg ctctatttcc tactgacccc cttcctgacg
     1441 gacctccctg tgtcgccatg tgaaagtgaa aaggacatca cagaggatgt gaagatgagg
     1501 cagagacaaa ccaggaagaa aatcgctact ctaaaaggtt gcagagatgc tgcaaagaat
     1561 gtggaagaaa ccaagactcc atcacaacct atgaaaatgg agcaacttct ccaggactcc
     1621 acaccacatc cctggttgaa ccgtcttcag aaaatggaac accttctgat atttcagcca
     1681 ttgtctcatc tcaattgctt ggagtatctt atacagaagg aatttagtca cattttctgg
     1741 ggcatatcca ctcttttctc tgagtcagtt ttggctgctc ccaacatcct cagaaaccct
     1801 tccttagcac aacacaaaac cctcaggttt catgatgcct gtcgccctgc tgcccaagat
     1861 ccttccaggg agcaaagacc tccagagtgt tcccaagaac agccattgcc tgcacaactt
     1921 gtgacaccaa gctcattagc tgtgacaaag gcccaactaa tacaaatctt cccaagctct
     1981 acaccaatca aaacacctcc ttgtttcaag aggcaggcct ttggaaaacc acgtcctacc
     2041 agtgacaaag gtatacctgt atcactatta atggaaaacc atgcttgtca acatggacag
     2101 tattggaaac acaccaaagg tgatccaaga acatcaggca gtctttacga aacccactca
     2161 aaacttgacc ctaaacaatg agtctgtcag gtcaggctcc atcccttggg agcattggca
     2221 gatggcccat aggaatgagg ggccacagaa tgaagttaag gatactaata tgggacaaga
     2281 acaaggaacc cccatcacat tcctctcatc ctgaaagttg acccagctac agggaaattt
     2341 tgtagcaaaa actgataatt attgcaagag cagggctcaa ctctcccaac ctgcccagca
     2401 ctccatcctc aaccacaaaa gctacatgtg gaacaaaatg aaggggactg tgcccatggg
     2461 agtaccctta caggaggtca cagaaaagaa tgaaaaatat accaccatca agaagggcac
     2521 tggtttaggg ggaaacacct gccttgtcct tccatcagca accttgagaa ggggctgaaa
     2581 tttaggaata ccacactaag gacagaaaag cagctttttt gtaaaggctg ctaacaatca
     2641 tacctgcctt gattcaaaaa atgaaaagga agccacagtc aaattgtaca gaacttccag
     2701 tcaaacccag aaggaaacca tatctgtatt tccttgaggc aagcgatctc accacacctg
     2761 gagttccagc ctcaaacctt ccccaggttg tgtttccctc ctcaaccatc tgtgattcca
     2821 aggaggagta ctattccaag gctgccatga tcctggaaca tttgcatcac caggacccag
     2881 gagggacaag tgtagaaaat gcctcaaatg ccaggctaga gagtcctctg tggaagcact
     2941 cagctgcaga ggtgcaggag aaccaaagag gccctgaacc tgatgcaagt catgggccct
     3001 caaaagtctg agcagatcca tttcagacat atctgagtat tcagcaactt gatttttgcc
     3061 ttcaggcaaa aacccagcag agcacgactg tggaaggaag tgaaacaggc agtctccaaa
     3121 taaataccaa tacgaaaatt gacaagcatc catcaaggaa gatttcagta tgaggactca
     3181 gctcatccct gctgtcctgt aatagtgctt ggtcaggatg aaactgttcc accctcagca
     3241 gccaaaccaa gcaacatagt ggaggtgaaa gaagagccat ctgcatggac agtgagtctg
     3301 ggatccagtg agagtcacaa tggccaagct atcgatatca gtgccaggga cattggatct
     3361 ttacaaccta acaaacatcc tggtcatccg caaacaccta ccctacagcc ctcagaggac
     3421 tcggtccaaa aacacaatca cacagtaaga tagacctgaa atcaaaggag caggcacagc
     3481 attggcctgt gagacacgat ccagatgtcc ctagtacagt acaccctgcc aaggtcagcc
     3541 tgccttcaaa accctggatg catagcttcc agaatacatg ccaaaacccc ataaataccc
     3601 tgggtttaga tgatgtctcc atgaggagac atgagagggt agaaactgga gagatatgtg
     3661 tcccagaggg aaaacatgaa gtgaaagatt tcaaggggtc ccatccccat gaagggaagc
     3721 agattactat aggatctaga gccataagcc agggagaaag gcttcgaaga gtaagtcctt
     3781 ccatcccaag ctccacacag atcagggcta caaccaagac ttggatacca ggggaaagga
     3841 aggttacgtc gaagagctct tggaataaat tcacaaggaa tgcttcaaaa tatggaggct
     3901 ccagcacaaa atacttaggt caacgtgatt ccgtagagaa tgttctcccc acaacaggta
     3961 ctgagcaagt acaggaggtg gtaacaagaa acaaggtcct ctacaataca gtagctgaaa
     4021 tataatcaat tgtgaatgct ctggcccaga tcctagaaaa cactgaagag taccgatcat
     4081 cccactcttc tatgggtctg catgaaacaa tccatagcag aacagtgaac agattgagct
     4141 gtggccatgt cagccctgag atcaataatt atccctttac atatacgggg attgaagacc
     4201 aactacagtc agggatcgaa gcccagagag cgtgtgatca agaactgaac caaggtgaga
     4261 cagatatcgg tttagaccag ctccccgtcc ccaagggaag tgactttcct tcttagtaca
     4321 ggggaattgg agacaagcag tcgtcaggtc ttcctgacca gagattctgt gacccaaata
     4381 aaatcacaac aaatgttgga atggtctgct gaccacatag cagcttcatg gggcacaaaa
     4441 ttccttcgga tacagagcaa tcagaagcaa acaccagcca gaaattgtcc ataaacccct
     4501 tttcccacat caaactacga agaaaggaac gggctgtggc cgttccctga gttcatagag
     4561 aattttccaa taaagcacgg gggaaatgac tgcttaaaga cttcagttgc tgtccaccaa
     4621 gcctctcaca ccaggtagac ctcaccagga tgggcaagga ggaggaggct ctggccatca
     4681 tttttcaaga tgtcccatct gcccatccat tgtgtccccc atgcttcctg gtaataaact
     4741 tggttttgtc cctgcaaaga aa
//
