LOCUS       XM_039100149             963 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RBPJ-interacting and
            tubulin-associated protein-like (LOC102546324), mRNA.
ACCESSION   XM_039100149
VERSION     XM_039100149.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100149.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..963
                     /gene="LOC102546324"
                     /note="RBPJ-interacting and tubulin-associated
                     protein-like; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 66% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102546324"
                     /db_xref="RGD:7715669"
     CDS             244..963
                     /gene="LOC102546324"
                     /codon_start=1
                     /product="RBPJ-interacting and tubulin-associated protein
                     1-like"
                     /protein_id="XP_038956077.1"
                     /db_xref="GeneID:102546324"
                     /db_xref="RGD:7715669"
                     /translation="MQALHLHHRSPSSYPVKARASHVDETLFGSPTGTPPSLPDFDPP
                     WVQNCNRSRGVSPGLPTVSVAKRDCESPSSRGSTANLTLRKKNKYRLIGHTPSYCDEP
                     LFGSQPQGTSKERSQTAMEDAAKLQTLFWTPPSTPRGSYSPRPRVTPLRAIHPAGPSR
                     TEPRVAKDSQRMFRDGLDVPRSLGQRRSHSLTHLTIPSTGPWSYTSGATVQSPLITCN
                     VCSGSVSVPAILPRKPKAPWK"
ORIGIN      
        1 gaacgcacca tgcttgaaaa gctctttgca caaaaagaca ggagtgtcct gtttagcctg
       61 cgacatgcac aaagcacggg gttcgaaccc atgcacctca gacgccaggc ggtcgtgcag
      121 ttcttcgtgg gaagtagaaa cgggaggatc cggagttaca aggacactgg aggctgaatc
      181 tgcctggcac agtaaaccca ctgggcagcc tgaagacccc ggtggaactg gcccagcggc
      241 agaatgcagg cactccacct tcaccaccgc agccccagca gctacccggt caaggccagg
      301 gcatcccatg tggatgagac cctgtttggc agcccaacag ggactccacc atctctacca
      361 gactttgacc caccctgggt gcagaattgt aatagatcca gaggagtgag cccaggactg
      421 ccgacggtct ctgtggccaa gagagactgt gagtccccct cctccagggg tagcaccgca
      481 aacctcacac taaggaagaa aaacaaatac aggttgattg gccacacccc atcctactgt
      541 gatgagccac tgtttggctc ccagccacag ggcaccagca aggagaggtc tcagacagcc
      601 atggaggatg ctgccaagct ccagactctt ttctggaccc cgccatccac ccctaggggc
      661 agctattcac ctcgccccag ggtgacccca ctacgagcca ttcacccagc tggaccctcc
      721 aggacagagc ccagagtggc caaagactct cagaggatgt tccgggatgg gctggatgtt
      781 ccccgctctc tgggacagag gcgttcccat tcactcaccc acctaaccat ccccagcacg
      841 ggtccctggt cttacacatc aggggcgact gtccagagtc ccttgatcac ttgtaacgta
      901 tgctcaggca gtgtttcagt accagctatc cttccccgaa agccaaaggc tccttggaaa
      961 tga
//
