LOCUS       XM_039113341            1749 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus probable ATP-dependent RNA helicase
            DDX41-like (LOC100912568), mRNA.
ACCESSION   XM_039113341
VERSION     XM_039113341.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113341.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1749
                     /gene="LOC100912568"
                     /note="probable ATP-dependent RNA helicase DDX41-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 11 Proteins, and 86% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100912568"
                     /db_xref="RGD:6486301"
     CDS             1..1749
                     /gene="LOC100912568"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX41"
                     /protein_id="XP_038969269.1"
                     /db_xref="GeneID:100912568"
                     /db_xref="RGD:6486301"
                     /translation="MEDLEPERKQVRLNQATAGGSRSKDEDEDYVPYVPLRQRRQLLL
                     QKLLQQRRKGAAEEEQQDSGSGSEPRGDEDNITLGPQSNVSLLDQHQHLKEKAEARKE
                     SAKEKQLKEEEKILEGVAEGRALMSVKEMGKGITYNDPIKTSWTPPRYILSMSEEQHE
                     RVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPILSGRDMIGIAFT
                     GSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQ
                     EDSSPLLHCALCIGGVSVKEQMETMRHGVHIMVATTGRLMDLLQKKMVSLDICRYLAL
                     DEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTISVGRA
                     GAASLDVIQEVEYVKEDAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEA
                     VAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYV
                     HRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLD
                     VGGERGCTFCGGLGHH"
ORIGIN      
        1 atggaggatt tggaacctga gcggaagcaa gttcgcctga accaagccac tgcgggtggg
       61 agccgctcca aggacgaaga tgaggactac gtgccctacg tgcccttgcg gcagcgcagg
      121 cagcttctgc tccagaagct gctgcagcaa agacgcaagg gagctgcaga ggaagagcaa
      181 caggacagtg gcagtggcag tgagccccga ggagacgagg acaatatcac gctgggtcct
      241 cagtccaatg tcagcctcct ggatcagcac cagcacctca aagagaaggc tgaagcacgc
      301 aaggagtccg ccaaggaaaa gcaactgaag gaagaagaaa agattctgga gggtgtggct
      361 gaaggccgag ccttgatgtc agtgaaggaa atgggcaaag gcattaccta caacgatccg
      421 atcaaaacta gttggacacc cccgcgctat atcctgagca tgtcagaaga gcagcatgag
      481 cgtgttcgga agaagtacca catcctggtg gaaggagacg gtatcccgcc acccatcaag
      541 agcttcaagg aaatgaagct ccctgcagct atccttcgag gcctgaagaa aaagggcatc
      601 ctccacccaa cacccattct gtctggtcgg gacatgattg gcatcgcctt cacggggtca
      661 ggcaagacac tggtattcac actgcccgtc atcatgttct gcctggaaca agagaagcgg
      721 ctgcctttct ccaagcggga aggaccttat ggactcatca tctgcccctc gcgagagctg
      781 gctcggcaga cccatggcat cctggagtat tactgccgtc tgctgcagga agacagctcc
      841 cctctcctgc actgcgcgct ctgcatcggg ggcgtgtcgg tgaaggagca gatggagacc
      901 atgcgacatg gtgtccacat catggtagcc acaacgggcc gcctcatgga tttgctgcag
      961 aagaaaatgg tcagcctaga catctgccgc tacctggccc tggatgaggc tgaccgcatg
     1021 atcgacatgg gctttgaggg tgacatccgt accatcttct cctacttcaa gggccagcgg
     1081 cagactctgc tcttcagtgc caccatgccg aagaagattc agaacttcgc caaaagtgct
     1141 ctggtcaagc ccgtcaccat cagtgttggt cgtgctggag cagccagcct tgacgtcatc
     1201 caggaggtgg aatatgtgaa ggaggacgcc aagatggtgt acctgcttga gtgcttgcag
     1261 aagacgcccc cacctgtact catctttgca aagaagaaag cagatgtgga tgccattcac
     1321 gaatacctcc tgctcaaagg agttgaggct gtggccattc atgggggcaa agaccaggaa
     1381 gagcggacca aggccattga ggcattccgg gaaggcaaga aggacgtctt agtggccacg
     1441 gatgtggcct ctaaaggcct agactttcct gccatccagc acgtcatcaa ctatgacatg
     1501 cctgaagaaa tcgagaacta tgtgcaccga attggccgaa ctgggcgttc gggaaacacg
     1561 ggcatcgcca ccacctttat caacaaggcc tgcgatgagt cagtgctcat ggacctcaaa
     1621 gccttgttgc tggaggccaa gcagaaggta ccacctgttc tgcaagtgct gcactgtggg
     1681 gatgagtcca tgctggacgt cggaggagaa cggggctgca ccttctgtgg aggccttggt
     1741 catcactga
//
