LOCUS       XM_039082513            6188 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RNA polymerase-associated protein
            LEO1-like (LOC100912347), transcript variant X1, mRNA.
ACCESSION   XM_039082513
VERSION     XM_039082513.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082513.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6188
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6188
                     /gene="LOC100912347"
                     /note="RNA polymerase-associated protein LEO1-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:100912347"
                     /db_xref="RGD:6487844"
     CDS             3206..4267
                     /gene="LOC100912347"
                     /codon_start=1
                     /product="RNA polymerase-associated protein LEO1-like"
                     /protein_id="XP_038938441.1"
                     /db_xref="GeneID:100912347"
                     /db_xref="RGD:6487844"
                     /translation="MDLFGEIDDVSSESDEDQRAPAPRRPVSTAGTCGVPQNQQVERR
                     ISETRVRIAVPSIKSDLGNELYFVKLPRFLRIEPKPFDPQHYEDEFDDEKELYEEDKT
                     RLKLKVENTIRWRMCRDQEGSKTKESNTRIVKWSDGSMSLHLGKEVFDIYKAPLQDNL
                     NQLFIREDTGLRGQAIFKSKLTFRPHCTDGATYKKMTLSFGTRSSKTQIRILPMAGRD
                     PEWPCPDLIKIQKKELRVSTPRKVRLQRKNQRQKNQQRTDPVSTIQKPKHDVEEEEVV
                     VVGEGEDGRSQASSLVATKSRQQGAANEKQAPSSSDCNHEGLEEHEARGLLKAKRLGS
                     DQGDKPFRREQGRKRKTEE"
ORIGIN      
        1 tcctccccaa cttgcttctt ggtcatgatg tttgtgcagg aatagaaacc ctccctaaga
       61 cggggtgaat gcaggaccat actccttccc accctttgca ttctgttggc aagaacaaga
      121 atcactaccc acaggaccaa gttaaatcca gcacaacctc attttaactg attatttttg
      181 cagaaatcta tcccaagtaa ggtcacacac tgagattctg tgtgggcacg aatttatgtg
      241 tggggttaca attcagcctg ctcgagtaat tacagtaatc catatatact tacttaaaaa
      301 aggttctgtt tttaaagatt tatttatgta tatgagtgtt ccagcttcat gtacaccctg
      361 tgtgccagaa gagggcatcg gatcccatta cagatggttg tgagccacca tgtggttgct
      421 gggaattgag cttaggacct cgggaggagc catgactggc tcttaacaac tgagccatct
      481 ctccagccca tatatataca tgtaaaatga acaaaacata aaagttataa attttttact
      541 tatgtgtgtt tgtgtatatg tgccatgtgt ggggcaactg aggaggccag tagagggcat
      601 cagatcccct agagcaggag ttgcaggtga ttgcgagctg cctggtgtgg gtgctgggaa
      661 ctgaaacgtg ggtcctttgc aggaacagca tgcaggctta accacagggg catctcttcg
      721 gcccttaatt ttgatcttta aaaaataaca ctttataaga gctgaggtct agcttcaagg
      781 ttagagtaca ttgtaacttt tttttaaaag aaaaatcccg aatcgccatc ccaccccttt
      841 tctaacttag aatttgagtc cctatgtgtt ttgtggctga gtcggcactc ctatacctga
      901 cttctgagcc cttccatcct tcccaaggca atgtgtgtgt ttattccctt actagtagac
      961 acgtgtgtgt cagttgtcag cctgtctcta agcccatgta tttttgtgat gctgtggtca
     1021 tctttgccag ccagcctgtt gggggcgcta tagggagact gaaaggctgg atagcagaga
     1081 ggggttaact ccttcctgtt tgcccctggg cccttcaggg ggtttcctct tagagttcct
     1141 gtgaggggtc caccggcagt tcaggtcagg agaggcaggc agttccttct gacagcagct
     1201 gagtccagta ggaagcctga gagccagagc caagcccagt gttccccaga gtcaccaggc
     1261 cagtggacag ctgccttcct cagatagttt ctgactgtag ctctgacagt tttggaacac
     1321 cctcatagac cacactggtg tcaaattcag agatctgccc acctctgtct tccagttctg
     1381 ggattaaagg cgtgagttac catgcccagt ttctgggttt ttcttttgtt tttgtttttg
     1441 ttttttgttt tttttagact ttttaactac caatttggtt tccttaatag agataggact
     1501 gttttgatta tttcttcttt agtaaatttt ggtggtttgt aatcatcaag taactggatt
     1561 atttgcctga gatgttgaat ttgtcttatc ccccctgtta ttgtggtata gctctctttt
     1621 actcaaggta tttgtcattt gtgtcttctt ggtctttcag tagggccact aagatggctc
     1681 agtggctgag gacgcttggt gccatgtctg atgacctcag tttgattccg gaaaccacac
     1741 agtaggagag aagtgactcc tgcaagttgt cctctgacct ccaccatata tacacacaga
     1801 taaatgctaa aaaactcgta tttaaaatct aggctatgtt cccaggctag aatttggttt
     1861 tgctttattg gcaagctgtt agactgttta ctgtttcagg atgctggttg tcatgcgcac
     1921 aggtaattag tgtaagtata aagtagtttt gttcagtcgt gggccacagc atttctttcc
     1981 agagttgttg agggcctata gaagaactgc tggaacggca ggacctttga gaacatcatt
     2041 atctggtctg tgattataat ggcaactcca gcatctccct cactagacaa gttaataagc
     2101 tgggcattgt ggtacatact gagtgtggag aactccagtg tccacgctaa gtatcctgag
     2161 gctgtacaag gccattgggg atcctggaga ataaagggaa tggggaagga cacgaggaac
     2221 gagggaagga ggtgcttctt gggtgactgt tcagtgtctg ctacatgacc aaatatccca
     2281 gtgcacaaca gcttacaaca acataggaat ttttcactca gatctttggg gtcaggactt
     2341 ggaaatggct tagctatgag cctctggttc aggtactcac agggctgtgc tctcgaaggc
     2401 ctgtctgcag ctgaaggatc ggtttctgag ctaacttaca caactgtctt tcaccacatg
     2461 ggtgggagtc ccggcaggca gagtgtgtgt tttcacagtt gcttccctcc cagtgaaaac
     2521 tagcaaggca gaaaaaccac agcattagtc atagtgaggt ggtggtttgc tgatcccaca
     2581 gacgacagac ctgacagaca ggacacgaga gagcatcaca gccagtggac ttgctagacc
     2641 catatttttg ttttgttttg tttttgaggc agggtctcat gtagtccagg ctagccctaa
     2701 ctccctttct acttccaaat gttgggatca ccatcatgta tggtgtgcac caccatgccc
     2761 agctctctgg gaaccctcct caaaatggtt atcctagtga tgtcgcctcc ttccttctct
     2821 gaaggcactc tagtgaactt gcttaaggcc aggcttgagg ggccagcttg agatggcttt
     2881 ggtacagatt tggtttgtga atattgggaa tgtgttgggg aactacataa agaatgtcgg
     2941 ctaggggaca ggatggggga cacttggtct tgcagaagac tcaagctcgg ttcccagccc
     3001 ccggtgagag gcagctcaca accgcctgta tgtgagtcca cctccagggt atcttactca
     3061 ccccgtctga cctctgcctc agtgggcgcc tacacacggt acacctatca ccgtccctca
     3121 ggtaccttct taaaaattaa agataacttt agttagacca attaataatg tctattcctt
     3181 caacactgaa tatgatagtg ggaacatgga tctgtttgga gagatagatg acgtttcctc
     3241 agagagcgac gaggaccagc gagcacctgc tccaagacgg cctgtcagca cagctggaac
     3301 ttgtggagtg cctcagaacc agcaggtgga acgccgcatc tctgaaacca gagtgagaat
     3361 agcagttccc agcatcaagt ccgacttggg aaatgagttg tattttgtta aactacccag
     3421 atttctcagg atagaaccca aaccatttga tcctcagcat tatgaagatg agtttgacga
     3481 tgagaaagag ctctacgagg aagacaaaac gaggttaaaa ctaaaggtcg aaaatactat
     3541 acgctggagg atgtgccggg atcaagaagg ttctaaaact aaagaaagca atactcggat
     3601 agtcaagtgg tcagatggaa gcatgtccct gcatttaggc aaggaagtgt tcgatatcta
     3661 caaagccccc ctgcaggaca atctaaacca actgtttata cgggaagaca ctgggctccg
     3721 aggacaggcc atctttaaat ccaaacttac ctttagacct cactgtacag acggtgccac
     3781 atataaaaag atgacccttt catttgggac cagaagttca aagacacaga ttagaatcct
     3841 cccgatggct ggtcgagatc ctgaatggcc atgcccagat ttgatcaaga tacagaagaa
     3901 agaactgagg gtatctactc cccgaaaagt ccgtctgcag aggaagaacc agaggcagaa
     3961 gaaccagcag cgtacagatc cagtttccac catccagaag cctaagcatg atgtcgaaga
     4021 ggaggaggtg gtggtggtgg gagagggaga agacgggcga agccaggcct ccagcctggt
     4081 tgccactaag agccgtcagc agggtgcagc caacgagaaa caagccccat cttcttcaga
     4141 ttgcaatcac gagggactgg aagaacatga agccagaggg ttactcaaag caaagagact
     4201 cgggagtgac caaggagaca agcccttcag gagagaacaa ggaagaaaga ggaagactga
     4261 agagtaactg tgcattggtg tctagcatag ccgttagatt tccctctgtc ctgggactgg
     4321 ttctagggct ttgtgtgtgc tgagcatgcg tcctacgact caggtacatc cctcgcccgt
     4381 cagatctact gaagacagaa cagttgttct gacctacatg aaccaatgag acgggccatg
     4441 cagaaacccc taaattccat tctcctttca tgcatatata ttatgtattc tttgttttgt
     4501 tttgaaatga gctgtcacca ggtagccctg actggcctgg aattcacaag atgtacctgc
     4561 ctctgcctcc agaagactgg gattaactgt gtgcggcacc acacctcccc tctttaaact
     4621 tttatagcac tattctgtag ctgtccaata aaactagtta atattagctc caggctcatc
     4681 tagaataccc agaagtcctt agcttcggtt tcagtcaggg ctcctataca tggtgctgat
     4741 ctgaagcctc tgacagaccc attactctct aggcatgaac tctacagatc atgcaagaaa
     4801 gcttaacatt tgaacggcaa aaccgtttgg caatcttgca ttacaggtgg tttagccaca
     4861 cacacttcat ccctgggctc agcagtgtca actgcctcag ggaacacatg gtcctcaggg
     4921 accaacagat ggtggcactg ttcaggccca gtgcatagca ctctaggcct ctcatacttg
     4981 ggagagctgc agcttgcgct gcatgaacgt ccatgactca tcatcctcag gagaataaac
     5041 acagccattt ttattcatga aacagtgatg tcagccaagc atggctgact tacagctcac
     5101 acctgattgc agcatttgaa agactgaagc actttgagtc tgagcccagc ctgggacctt
     5161 cagtaatgta cttcaagtag attactgcta tacttgaacc aaaaataatt tcatagggtt
     5221 taatttatac tcattcttgt ctgtccataa aactaaactg acatatacaa agggcacatt
     5281 ttgcagtaag gcaaaggcca ttgggcatca gtcaccccca ccctaccctc ggagtcagtg
     5341 aaacatatca cagacaggca caactgtgca ctgatacaaa gatggctgac tacagaccat
     5401 tctgcatggt tccacatggt ggtgcaggct acagattggg cggctccaac agacttaatg
     5461 ccttacattc ctagcaccaa ggctgagtcc tagtgaggac ttgcagacag cctgctacct
     5521 tcttgctggt cctaaagagc ccttgaggtc ccttgaggac ctttcatacc cctacttgcc
     5581 ttccaaaggc ccatctccaa atcccaccac cactccaagt tagggcttca gcagaggagt
     5641 ttggggaggg ataaaaatag agtccataag gcgggaaaga gtagctcagg agaatgaaaa
     5701 agctttgtct tttactaata aatcagctta gcaaacaaag caggttttct tcatacacat
     5761 ggtgtactct gtaaccattc cttctcctcc ccacggtaag cttgttcctg acggaggctg
     5821 taaggagtga gtgtcagatt ctaaaactaa agggattttt taaagtctga atataggata
     5881 tttgataaac tttaataaat ttacttgttt ctgtatggaa tgtttaaatg cctctagtct
     5941 tcaaaagaaa ctttattggg ttagaaactg ggtggattat acttgttatt taaatgtcag
     6001 aaaattaatt gcttttctac ttataaaaca tttagagtgt tctgatatgt attaggagaa
     6061 ctttaatgcc tgacttcaaa ggatggagaa ctatacactg ccgtaaaggt ctcttcaggt
     6121 gtcaaaccaa gacaaatgta attcagccac aggactgaga caaataaagc aggcatgtgg
     6181 aatcacaa
//
