LOCUS       XM_039111098            3131 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interferon alpha-1-like
            (LOC100912314), mRNA.
ACCESSION   XM_039111098
VERSION     XM_039111098.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3131
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3131
                     /gene="LOC100912314"
                     /note="interferon alpha-1-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 52
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100912314"
                     /db_xref="RGD:6487699"
     CDS             381..956
                     /gene="LOC100912314"
                     /codon_start=1
                     /product="interferon alpha-1-like"
                     /protein_id="XP_038967026.1"
                     /db_xref="GeneID:100912314"
                     /db_xref="RGD:6487699"
                     /translation="MARLCAFLMILIVMSYCRSTCCLGCDLPHTHNLRNKRAFTLLAQ
                     MRRLSPVSCLKDRQDFGFPLEKVDGQQIQKAQAIPVLHELTQQILSLFTSKESSTAWD
                     ATLLDSFCNDLQQQLSGLQACQMQQVGVQESHLAQEDSLLAVREYFHRITVYLREKKH
                     SPCAWEVVRAEVWRALSSSANLLARLREEKK"
ORIGIN      
        1 cttttatgta atattttaca gcaaattttg atttacaata aatatgtaaa ttttgaacaa
       61 agacagttta agagtgctgt aacagttaat ggaaattcaa attagaaaaa aatgctggaa
      121 aacatctttt ggttggggag tagtgaaaga ggaagcaaaa aggaaaacca cagtggttta
      181 caaaatgccc agacccaaac agagaatgag ttaaagaaag tgaaaagtcc attggaaagt
      241 tatgggaggg cattcagaaa gtaaaactag tttttaccct atttaagaca catccacacc
      301 aggatagtct tcagaaaacc tagagtggaa agttcaggac caaacaaccc cgagaaccag
      361 cagcatctgc aagatccata atggctaggc tttgtgcttt cctgatgatc ctgatcgtga
      421 tgagctattg tagatcaacc tgctgtctag gatgtgacct gcctcatact cataacctca
      481 ggaacaagag agcattcaca ctcctggcac aaatgaggag actctcccct gtctcctgcc
      541 tgaaggacag acaggacttt ggattcccct tggagaaggt ggatggccag cagatccaga
      601 aggctcaagc tatccctgtc ctgcatgagc tgacccagca gatcctcagc ctcttcacat
      661 caaaggagtc atctactgct tgggatgcaa ccctcctaga ctcattctgc aatgacctcc
      721 agcagcagct gagtggtctg caagcctgtc agatgcagca agtgggggtg caggaatctc
      781 acctggccca ggaagactcc ctattggctg tgcgggaata cttccacagg atcactgtgt
      841 acctgagaga gaagaaacac agcccctgtg cctgggaggt ggtcagagca gaagtctgga
      901 gagctctgtc ttcttcagcc aacttgctgg caagactaag agaagagaag aaatgagtcc
      961 tgagccaaag tcgacaggac ttttctagac tagaacaatg tacctcactg ctcagattca
     1021 gccatctcag aactgtctct cagttgggag gaatgcacac aatttgtcta aatgtttctc
     1081 taaatatttg ttctttttcc actcagtttt atgtctgtct gtctgtaccc atttatttct
     1141 ttatgtactt atttattcac ttatttaact atttatatga tgtaacatat attgtagtat
     1201 agtttggtac agatatgttt tccataaatt attcctaata tagaaatgta acttctttta
     1261 ttcattcatt ctttaattac ttaaaacaat tttattgttt acactgattt ttttctgtaa
     1321 agaaactata tattttatca acctgccaaa tattgtaccc gcatatgaca tttcatcgtg
     1381 ttcaggcaat tagatatacc tgtctcttgc ttctcatcca ttcatggtta attcttaagt
     1441 ctttcctttt ctcctgtgta tcatattctt ctgaatgtac tgacagcatg ctgtgtaggg
     1501 atcaggcata atatcttgtt cctatcaaac tgtgtaaagg gattggtatt tgtacaagac
     1561 actccacaac caagttctca gcacaaaggt catttatttg acccagaaag acaaaggacc
     1621 aagagtaaga gacaaagaca ggtgatagag gactagggag aagcagagga gatacttgtc
     1681 ctggggttgg ggagaggaga caaacatgac ccataggcaa aaggcagcat ataaaactac
     1741 aagggggaaa acctctgcta ggataaagtg ttaatcttga ttggacagct taattggggc
     1801 agccacaagg gggcctttgt tggttttcag tgctttgata gctggacttt ggtagtcatg
     1861 cttaagtgaa tgaagtaggc aaatcaggga atagcccttg atgggcagct ttacagttct
     1921 catgcaatgc tttgtagcaa agcagaggaa ttaaagtaaa aggctactgt ctgtcagagc
     1981 cctgttcgac atgctcaaga ctgactagaa tccttcatca tgacttagtg tactttgaaa
     2041 aggatttttt tcagccttta gcagcctcta tgttcctgac actgtctatt ctcaacttct
     2101 aggagtgttt aagtgattgg aagtacaaat atcagtgaag tcatatatac agtatgtaaa
     2161 tagagcacac tgtaataact atcttgccta tacagtgaca aatgacatat atcctgagaa
     2221 gaaatctgga gtgaaaccca gtcataacaa cctcaagaaa tatcctttga gataaaccta
     2281 aataaggatt tgatacatgt ctcatatgta tcttttagga ctccagtatt ctctcccaat
     2341 tttatgtgtt ccctcttttt aaaaattatt ttatttactt acatttcaaa tgttgtccca
     2401 cttgctggtt tctgctttgc aaaagtctca tcccattcct cctttccccc ctgcttctat
     2461 gagcatactc cccacccacc caaccactcc agtctcacca ccctagcatc accttatact
     2521 gaggcatcac gccttcacat gtccaagggc ttcccctcct gtcagcaagc acttcttggc
     2581 atcaacaata gtgtctgggt taggtgtctg cagacgggat gaatcccagg gtggtgtggt
     2641 ctctgaatgg ccttcccttc agtctctgct ccactctttg tctctgcatt tcctttagac
     2701 ctcttgcttc cctggcatct gggattttct agtggctatt ctcagttccc catcccccac
     2761 taccacatac ctcctttcaa ttgctgatcc tctgtacttc acccccccat gtctcctcct
     2821 agacctcatt ctgtccccct ttcccccctc ctctttccct tcctctacct cccatgatta
     2881 tttttccccc ttctaaatag tactgaagca tccacacatt accattcctt ctttttgagg
     2941 ttcatattgt gtgtgagttg tacatggggt attccaagag ttttggctaa tatccattta
     3001 ttagtgagta cataccatgt atgttctttt gtgattgggt tatgttactc atgaagatat
     3061 tttccatctt ccaatagttc catctattgg cctgcgaatt tcaagaagtc atcttgggta
     3121 actcaagctt t
//
