LOCUS       XM_039108872            5767 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC100912259
            (LOC100912259), transcript variant X2, mRNA.
ACCESSION   XM_039108872
VERSION     XM_039108872.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5767
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5767
                     /gene="LOC100912259"
                     /note="uncharacterized LOC100912259; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 28 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100912259"
                     /db_xref="RGD:6488104"
     CDS             2611..3288
                     /gene="LOC100912259"
                     /codon_start=1
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 3"
                     /protein_id="XP_038964800.1"
                     /db_xref="GeneID:100912259"
                     /db_xref="RGD:6488104"
                     /translation="MAQSDFLYPQNPRRRQEVNRLHQQLLDCLSDCFQVTNKLTGLLN
                     AHLGCRLAFIEMRSDETIKRNCDLIIQAVTKIQKELQKVDEALKDKLEPTLYRKLRDI
                     KERETEKIAIVQKVISVILGEATAAASAVAVKLVGSNVTTGIISKLASVLTHIGTSIL
                     GSIGVAVLSLGIDMVVQAILGAVERTQLQSAIQSYEKHLTEFKAASEKYHHAIAEVTD
                     AVKRQLR"
ORIGIN      
        1 ccaaagctgc catagtctat agcagtctca acaatataaa gtagaaactt caaggtctct
       61 tctgaaattc atccaatcac ttaactgtag ttcccaaagc aagacaaact ccaaattctg
      121 cgtctccatg tctaatgtcg aagtggtctt cagatctcca actccttttt cacctccctt
      181 gactacactg gttccactcc ccgttagcag ctttcctcag cggacagccc atggctctgg
      241 catcttgaac atcttggtgt cttcaaggca acttctttgt tacagcttct ccacacatga
      301 tcttctgggc tcctccaaag ggctggcgtc acttctccag ctctggcctc tgtagcattc
      361 ttagctcagg ttgatccacc ccactgctgc tgctgatttt agctcacagt tcagtgtgga
      421 gatgttacag aagcaggagc tccacatacc tggtcaggct gtctccataa tcacgaagca
      481 gagggcaagg aatgcctgct gggactcagc tcactcactc cactctaatg taatgaagta
      541 atggagtcca ggatctgcac ccaagggaat ggtgccaccc acagtgggtg ggtcttccca
      601 ccctaatcaa tataatcaag ataatccccc acagatatgt ccagggaccc atctctcagg
      661 caactctaga ttctgccaag ttgacaacaa taaacaccac atcccttctt ctggaagctg
      721 acaagatttt caatgtgtct gcactcacat tgcccccttt ttcatgaact ccattaaaat
      781 ggtcatgaat tcactttcta tctgggtttg tttttaagtt attttacctc tgaggtcaat
      841 aacccacaaa agggttttac catgctcctt ggtaacatac atgatcaaat attgtgtatg
      901 atcctaaata tacaatcact tggagatgag aggcaggacc ctaacaaaga ctagacgtct
      961 aacctacctc tttcttcttc attcctatga tgcctggtgt ctggggctgg gtagtgtgcc
     1021 tagaaccgct ccctgccaaa ctggaacaac agggctgtgc tcatgccagg acaaagcagc
     1081 acatattcca gtaagttcta tgataacaca acaaggtaac tcccagttaa actctgcact
     1141 tagggccaga ggcagctgca tttaaactgg aaggcctggg aggatctaca gctgttgggc
     1201 caactccatg acaagtctag gagatggatg aatctgtatt cctgctggga attcatacct
     1261 cagtggtaat taggctcata tgcatgtagt ttttctgtag gaaaacaaga tggtggtatt
     1321 cacatggcat ggccttggtg gtgctgataa agataatgcc actaagaggc acctcagagc
     1381 tgtccttctt gcagcccctg actctaggac cactgtactc catactttcc tgcacagaca
     1441 tcctctgctc acccatcctc ctccctttcc ttcctcactt ctttccttct cccttctcct
     1501 tcctggagtc ccactgggca ctggagacag cagacatgct gggctggaga gatcactcag
     1561 aggtaagggg cactgaatgc tcttccagat gactttgttc agtcacgagc acctccatag
     1621 cagttcacag ttgtctggaa ctccattgca agggatccaa tgccctcttt ggacctctgc
     1681 aggccccagc acatctccta cttgcgtgca tccagactca caaaaacaca caaaataaaa
     1741 attcaaatat gtattgttta catagacacg aaaacatgga aatgggaaaa ctgaggggct
     1801 ttacccatgg ccaggcagct aaggaatgct gagaactgag ccagggagaa agagtcttcc
     1861 agggagacga ggccatgagc agactattgg gttatccaat ccccagtcag tgcacaaacc
     1921 atatccatac cagcaacact gtgacgtgaa caggctgtac tatatattat gggtatgtgt
     1981 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtaaca attacaacga gagagaaaga
     2041 agcatgattt cacaggagaa caaggggaag tgcaagggag ggagaggaca tccaggcaca
     2101 cagtcctctg gacctgtgtc ctgttgggaa ggcataagtg acaaagagca gagcccccat
     2161 tctggatggg gacccttctg tatctggttt gtattacctg agaacgtaag agaaccaccc
     2221 gcagatgagg cccaactgca gcagatctaa agaaaacgta tctggaaggg ttgagaagat
     2281 ggacctcaga gctccaacca gacagagctc acactgaacc ggatttgtgc agttttatgg
     2341 cattttgacc aggtttataa tcactcaagt taacactgct taggacatca gcaggctgca
     2401 ttaaggaaac agaaggattc tgaaaactaa gccaggcagg agtggctcta aaccagatgg
     2461 gcagagggac ccagcagaga ccagcaaacc ctctggtcat cacattccac cagaagcttc
     2521 cagaggagcc cacatgagca cccttcaaca acactcccaa gcaacagagg ggacgcacac
     2581 ttggaacccc aacaagagac ttgctgaaat atggctcaga gtgacttcct ctacccacaa
     2641 aacccaagga ggcgacagga agtgaaccgc cttcaccagc agctgctgga ctgcttgtct
     2701 gactgcttcc aggtcaccaa caagctcaca ggccttctga atgcccacct gggttgcagg
     2761 ctggccttca ttgaaatgag aagtgacgaa accatcaaaa gaaactgtga cctcatcatc
     2821 caagccgtga caaaaatcca gaaggagctg caaaaggttg acgaggcact gaaagacaaa
     2881 ctcgagccaa ccctttatag gaagcttcgg gatattaagg aaagggaaac agagaagata
     2941 gccatcgtgc agaaggtcat ttctgtcatc ctgggagaag ctacagctgc agccagtgca
     3001 gtggctgtca aactggtggg ctcaaatgtc acaacgggta taattagcaa gctggcctct
     3061 gtgctgactc acatcgggac ttctatcctc gggagcatcg gagtagccgt gctcagcctc
     3121 gggatagaca tggtcgttca agccatcttg ggagcagtgg agaggacgca gcttcaatca
     3181 gccatccaaa gttacgagaa gcatctgact gagttcaagg ccgcctcaga gaagtaccat
     3241 catgctatcg ctgaggtcac cgatgctgtg aagcgccagt taaggtgaac actcaggtgt
     3301 ctacgctggg atggccctgc gcttctctct ttggcgccgt gctaacgtct ttaattttcc
     3361 agatgtctcc agcaatgtgg acacagataa acaatgtggc atgctcgggt gttaggacaa
     3421 tgagtgccca aaccagctgt gttggaccgt catgggataa cgctctatcc gggtcttacc
     3481 ctgctgtcag aaccactggg gtgtaaaggc atcatagaac agcaaggcac tgcctattgc
     3541 ttcctcattg ccaaacattc ctgctaaatg gagaggccat tcccattccc tgtttcaaac
     3601 atcacttatg tctaataagt cattcttaag aacattggac tagacacaga cctgtggtct
     3661 tcaagtaaaa tagacatcct tccgttattt ttaccaccgg attaaattca attgtctgtt
     3721 aactggaaac agcagcaaaa ccacaaaaag aacattttct tcagaaatga aaggaagcaa
     3781 tgtatctgtg aggttctact catcacaaaa tctgtctggg tggatttggg aaaggatgag
     3841 ataataaaat ttgtttctat agtgcaatta atttggaccc cttgttggtc atctatcact
     3901 tcagtggtcg aacattgtgg aacattataa aacacaagaa acaaacccta atgatcccta
     3961 cataaaatac attaagaaaa aagactcacc ccgtttagga atttttggga gaaataattt
     4021 cattttcact atcagcagaa agagtcggct ccctttgccc cataaagcat tagacctatg
     4081 ttatttgcca cctgaaatca gaaaaagcca gaaactatgg aagcatattg atctcacata
     4141 atttctgtag atccagcatt tgttttctac acccttcatc taagtgttct ttgtgagaca
     4201 tttttagggt ctacttctgt attagctagg attttactgt tgtgaacaga caccgtgacc
     4261 aagggagctc ttacaaagac aaacatttaa ttggagctgg cttacaggct catatggctt
     4321 acaggctcat aggtccagtc cattatcacc atggaaggaa catggcagca tccaggcagg
     4381 tatgatgagg gaacatgcca ggtatgggtc aggaggagct gagagttcta catcttcatt
     4441 ggaaggctgc tagcagaaga ctggcttcca ggcagctaga ggtaggaact cacccacagt
     4501 gacaccccta ctccaacaag gtcatgccta caccagcagg gttacaccat aacattcaat
     4561 tccctggcac acatagactt gttctaatat aagtgtatgg ggccatacct aaacatagca
     4621 ttggaaggag ggttagctcc tctttgcctt ctttcatttg ctcgctcgta tatcagttta
     4681 ctagcttcgt gggactgagc aagtactaga tccttggact cccattcata gctgaccatc
     4741 gttggggggt tggactacag aaggtaagtc agcataataa attcccttac tatatacaga
     4801 ctatccataa gttctgtggc tctagaaaac cctgaaagaa gaattcagat aaatcataaa
     4861 ggatttgggt tgattaaaag accatttgaa gcattatgga tcaacctctc ctctggaaaa
     4921 acttaaaata atgtaccctt tttctttttt gaaatataca ttttcgtgta gattatcact
     4981 ttgtgagtct cgcccaggca ctatttattc agttcatcat atgctgtgtg cttagaggaa
     5041 atatgtttgc tgagaacttt agatttcgtg cccagtgtta tttcctaact tgttctcaat
     5101 ggaggtacac atgaaggaca gcgtcgattt acacccgaca cctaacacat tatcaatgaa
     5161 ccactctgaa ggacagcatc catttacacc caacaactaa cacagaatca atggacgcct
     5221 cagaacgtta agcgaaccac taccttgcat ctggagagaa tatacttccg gaaatgcgtc
     5281 agaatttctt gatcaatcgg ccaatcaaat agcagcttcc ctacttttta ttctgattgg
     5341 gctatattag tgtcaatcta gaatgctccg gaatgaggcg ggtctgttgg cctatagtta
     5401 tccaatcgga tattgaatgc gagtggaagt cactctggct ctagagttat attctctcta
     5461 tggtcccagt acttggcaac gcgctgagag cgctggtccc gggtacagga agtgacggaa
     5521 gctggcggag gggcgcgagg tttcaagatg gcggtgcctg tgtggttgac cgagacccag
     5581 aggtgaaggc cccttcggag aaagtactcg ggaacccctc gctagtcgct ctcgccgtcc
     5641 cgggagactc tcagtcgttt tttttttttt taatgaagaa gtaaaccata taaactgtca
     5701 acatgggacg aagatcaaca tcctccacca agagtgggaa gtttatgaac cccacagacc
     5761 aagcccg
//
