LOCUS       XM_039100282            1045 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus synaptonemal complex protein 3-like
            (LOC100912196), transcript variant X1, mRNA.
ACCESSION   XM_039100282
VERSION     XM_039100282.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1045
                     /gene="LOC100912196"
                     /note="synaptonemal complex protein 3-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100912196"
                     /db_xref="RGD:6488326"
     CDS             42..971
                     /gene="LOC100912196"
                     /codon_start=1
                     /product="uncharacterized protein LOC100912196 isoform X1"
                     /protein_id="XP_038956210.1"
                     /db_xref="GeneID:100912196"
                     /db_xref="RGD:6488326"
                     /translation="MAVGGRGVRCSIHACASRVLQSVTYPAPRPRRCTWEKNSAQGTT
                     GCLRRERPERECGRSCSLGVRAQTFAQEDMPYKGKKATSKTAKRPRESSDSQSDDDVV
                     HHNFPPRPAEKHVIEISDEDSSSSDQDDQQARGSALKMTRELHGDPKKSHLAKRKQYC
                     QDVKTSIDTLNEKLVRIFKTQQRERKMLRSKYSKMFEPLFQQWEKDVMKVGQEEDSFV
                     NSSNQRAGTMYNAMMAQRATIDEAKTVSDQFLKNVQVLEDEQKVLDAIEQNKLENEMQ
                     SLKKKLATENQQQDLAAIESCLHSLFSEDNEED"
ORIGIN      
        1 atgcaattca aagacaatga tttgttcaaa gattcgttca aatggctgtt ggggggcgag
       61 gcgtgcgctg ctccattcac gcatgcgcat cgcgcgtcct gcagtctgtg acgtatcccg
      121 caccccgccc ccgcaggtgc acctgggaaa agaattctgc acaaggcacc acaggctgcc
      181 tgaggagaga gaggccggaa agggaatgtg gtaggagctg ttcactaggg gttagggctc
      241 aaaccttcgc acaagaagac atgccataca aggggaagaa ggctacaagc aaaactgcga
      301 agcgcccgag ggagtcttcg gattctcaat ctgatgatga tgttgtccat cacaattttc
      361 cccccagacc agcagaaaag catgtgattg agatcagtga tgaggacagt tcttcatcag
      421 accaagacga tcagcaggca agggggtctg ctctgaagat gacacgagaa cttcacggtg
      481 accctaaaaa gtctcacctt gcaaagagaa aacagtattg ccaagatgta aaaacttcta
      541 tcgacaccct gaatgaaaag cttgtgcgta tttttaaaac acaacaaagg gaaaggaaga
      601 tgcttcgttc caaatattct aagatgtttg agcctttgtt ccaacaatgg gaaaaggatg
      661 tgatgaaagt cggacaagaa gaagacagtt ttgttaattc atccaaccaa cgtgcaggga
      721 ctatgtacaa tgctatgatg gcgcagagag cgaccattga tgaagcaaaa actgtatctg
      781 atcagtttct aaagaatgtc caagtccttg aggatgagca aaaagttctt gatgctattg
      841 agcaaaacaa attggaaaat gaaatgcaaa gcctgaagaa gaaacttgcg acagaaaatc
      901 aacaacagga cttggcagct atcgaatcat gtcttcattc tttgttctcc gaggataatg
      961 aagaagatta gctgtgatca tgtcatgtga catgcacaaa acatgcctta cactaccaaa
     1021 aattataata taaattggcc catca
//
