LOCUS       XM_039100994            3949 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein BEX1-like (LOC100912195),
            mRNA.
ACCESSION   XM_039100994
VERSION     XM_039100994.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2098              JACYVU010000033.1  33926669-33928766   c
            2099-2413           JACYVU010000033.1  33926353-33926667   c
            2414-3949           JACYVU010000033.1  33924815-33926350   c
FEATURES             Location/Qualifiers
     source          1..3949
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3949
                     /gene="LOC100912195"
                     /note="protein BEX1-like; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: deleted 3 bases in
                     2 codons; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100912195"
                     /db_xref="RGD:6488322"
     CDS             2072..2458
                     /gene="LOC100912195"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 3 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein BEX1"
                     /protein_id="XP_038956922.1"
                     /db_xref="GeneID:100912195"
                     /db_xref="RGD:6488322"
                     /translation="MESKDQGAKNLNVENDHQKKEEKEEKPQDTIKREPSVAPTFEAG
                     KNCAPRGGHRQFRVRQPIAHCRWDLMHRVGDPQARMKEENVQRFGEDMRHLMGKLRER
                     QLREISTDLISMDPHYDHHDEFCLIP"
ORIGIN      
        1 attaattttg cttgaaagtc tgttttatta gatattagaa tggctactcc agcttgcttc
       61 ttgggtctgt ttgcttggaa aactatgttc cagcccatta ttctgaggta atatctatct
      121 ttcttgctga ggtgtgattg ttgcatgcag cagaaggatg taccctgatt taccacattc
      181 tgttagcctg tgtcttttta ttgggaaatt gagtccattt tcattaatag atattaatga
      241 ccagcgattt ttatttcttt ttattctgat gttggtggtg ttattgtttg tttgagtttg
      301 tgtgtgtgtg tgtgtgtgtg tgtatgtgtg tgtgtgttgt gtgtgtatgt acatatgtat
      361 gtgtctgtgc tcttcccttg catttactgg tacggaatta tttcctatgt tttcttggat
      421 atagttatca tccgtgggtt ggggtttttc ttttagtatt ttctatagag ctatatttgt
      481 ggatagatat agtttgaatt tggatttttc ttgaaatatc ttattttctc catctatggt
      541 gattgagagt tttgctgggt acagtattct aggatggcat ctgtggggtt tttttgtttg
      601 tttgttttgt tttgttttgt tttagcagtt gcaagatatc tctgtccagg cccttctagg
      661 ttttagagtc tgttgagaag tcatgtgtaa tgctgataag gctgcctttg tatgtctttt
      721 tccccttgct acatttaata ttttttcttt gttctgtaga ttgtgtgttt tgagtattat
      781 ctggtgagag gattttcttt tctgatctag tctaatttgt gttctttaag cttcttgtat
      841 gtttataggt atctctcact tgagattggg aaagttttcc tttatgattt tgttgagaat
      901 ttttttctgg gccttgaaac tgaaactctt caccttcttc tatcactatt attcttatgt
      961 aaggtcttct gatggtatcc cagattttat ggatgttttc tgtcaggaat attttagatt
     1021 taacattttc tttggctgat ggactgatgt aagcatttct tctattgtat cttcagtacc
     1081 tgatattctc tcttctatct cctgtattct gttggtgatg cttgcatttg ttgtttctca
     1141 tcttttccat aagtttttca tctccagtat tccctcagtt tgtgttttct ttattgcttc
     1201 tatttccact ttcaggtctt acaaagtttt atgtattttc ttcatctgtc ttattgtatt
     1261 tttctgtaca tctttaaggg atttctttct ttccttttta aagaccacta cctattcgat
     1321 tgtatttttc tgtatttctt taaagaattt cttcatttca tcttgaaaag cttctactat
     1381 ctttataaga tttgatttaa agtcattttt gtgtgcttca gttgtgttag aatatccagc
     1441 gattgctgta caagggcagc tgtgctctga aggtgttatt ttgttctgcc ttttgttgat
     1501 tgccttttca caaggacctt tagtcatctg gatggctttg gtccctggat gttcctgttg
     1561 tagtaggtgt tgggaggggg gttaacgtca atcgtcctga tttggcagac gtctaatgtt
     1621 tatcctaagg ttgtatggtt ctggatctgc aggtctgtac ggttcagaag ctgcagatcc
     1681 gatgaaggta agcagagagg tgtgagattg gatgtctgcc tgggatagag ggctgctcag
     1741 agtagcttgc catgaccaga ggactcagca agtagggaaa gatgagtgga ggaaggggta
     1801 aacaccttgt atggatcagg tttaacaggt ctaatgaagg tgggagaaga agtggggcaa
     1861 gaatggatat ccttgctctc cagccggcca tccctaacgg aggtacctgt tcctagtggc
     1921 acagctcctg gtggcgcaag cacgtgctcc cgggcagcgc agaaagcagg aggaggaaga
     1981 gcagagcagg tctgaggacc agaagcttcg cggcacacct ggtggtgagc atcactagga
     2041 agaggagaag gcaaagatag gcccaggagc aatggagtcc aaagatcaag gagcaaagaa
     2101 tctcaatgtg gaaaatgacc atcagaaaaa ggaggaaaag gaagaaaagc cgcaagatac
     2161 catcaaaagg gagccatctg tggcccccac ttttgaggct ggcaaaaatt gtgcacctag
     2221 aggaggtcac aggcagttcc gcgttaggca gcccattgcc cactgtagat gggacctgat
     2281 gcacagggtt ggagaccccc aggccaggat gaaagaggag aatgtacaaa ggtttgggga
     2341 ggatatgaga cacctcatgg gcaagttgag ggaaaggcag ctgcgggaga taagcactga
     2401 cctgataagc atggaccctc actatgacca ccatgatgaa ttttgcctta ttccctgagt
     2461 cctgaggttg tctctgaaga tgctatgggg acctctgatt tgtgatgtac tgttgtacaa
     2521 gttttgaggt tgctcctttt gtttagatct cgtcttgtta ccagcttgtg tgaaacttgt
     2581 gtttttttac tcttttgtta tcagttaatt cttttgttat cagttgcatg ggaaggtcca
     2641 tatgacatat tgtgaaccta ataaagcaga ttgaaaaggc aaaaaaaaaa atggatatcc
     2701 ttcctgggat agcaggttgc tcatacaact catacaattt ttcttgattt attttctttt
     2761 agtttggttt ggaaatattt ttaggctatt tttatcatgg aaagttgttt gatcatttgt
     2821 ttgttttttt ttccttcctt caacatggca gatagttttg ctggatttat cagtctagtt
     2881 ggtcttttag gagctggaat gctccaggct cttctagatt acagttttca ttgagaaaac
     2941 tagtcagcca atcagctgtt attctgaagg gtttactttt gtttgtgatt tttttccttt
     3001 tcatatttca atacacttta tacttagagt tttaactatt gtttgtcatg catattttta
     3061 tggcattttc tattttctgt gttattatta ttctatctgt atgagccttt ctttcccgag
     3121 tttggggacg ttttcttcta tagtcttatt gaaggtctgt tccatgtcat agacttagga
     3181 ttgttctcct acaactattc ctataagtct aaggtttggt cttcttatgg tgtacaacaa
     3241 ttcttatata tttctttcct attttttcca ctttctttac ttatttcatc tagatcccct
     3301 attgtatctt ccagaatatt gtatctatat tctatattct ggattcattt actacttata
     3361 agactttcct ttgtgttcca tagttgggtt agatttttca gttccatctt agcagcttaa
     3421 gtgctcttca atgttctatc tctttattga gttccttttt gaaatcttgg attgttttag
     3481 tcatttggcc atccacgtgt ttgtattttc ttgggcatca caccatttct ctttaagtct
     3541 ttattacctt taagttgact gagctgtttt tatatggctt ctctaaactt aattatttag
     3601 taaagtttac aatttttcat ttaaattcta tttcctgagg tccatctgga attctcattg
     3661 gcaaacactt ctagtggact ggaatttttt ttttgttttt tgtttttgtt ttttttgttt
     3721 ttgtttttgt ttttgtttca agggtgcaca cacaatccag ccttttgaat ataaatgaat
     3781 tgatgatgat tcattagaac ttttgacaag cttacagata taggagataa aaataaaaca
     3841 gtctgttggg gctggagaga tggttcagtg gttaagagca ctgactgctc ttccagaggt
     3901 cctgggttca attctcagca accacatggt agctctcaac catctataa
//
