LOCUS       XM_039111485            1696 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus selection and upkeep of
            intraepithelial T-cells protein 5-like (LOC100911772), mRNA.
ACCESSION   XM_039111485
VERSION     XM_039111485.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111485.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1696
                     /gene="LOC100911772"
                     /note="selection and upkeep of intraepithelial T-cells
                     protein 5-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 Proteins, and 48%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100911772"
                     /db_xref="RGD:6490949"
     CDS             1..1116
                     /gene="LOC100911772"
                     /codon_start=1
                     /product="selection and upkeep of intraepithelial T-cells
                     protein 2-like"
                     /protein_id="XP_038967413.1"
                     /db_xref="GeneID:100911772"
                     /db_xref="RGD:6490949"
                     /translation="MPEEEQFTVNGLPSPVLAPLGGNLELSCQLSPPQQAMHMEIRWF
                     RNRYSELVYLYRNGKDLLGETIYNFVERTELLKDDIGKGKVILRIFKVTADDGGYYHC
                     FFKDDKFYEEHIIEVKVTATSSDIRILMHPHNTEGVMLECHSRGWFPKPHMEWRDSKG
                     NFIPATSESHSQDENKLFNMTMNLLIKVSSTWNVTCYLQNLLTHQEESISIVLPGELF
                     SWKSVWIMLALLIFIHVIYSYTCWNQQHLLVGSCVQRKPPWKKSAIDIIISLIAITGV
                     MLILHLKQRVPDSDQYVELDTLCLEDISVILCVLIVFNIKLMSLIYFRMYGKYDGNCS
                     YLGDLVHMTKAQMSIMLPLKSFCLSKLNKIHINNCVV"
ORIGIN      
        1 atgccggaag aggaacaatt cactgtgaat gggttaccga gtccagtctt ggctccactg
       61 ggtggaaacc tagaactgag ttgtcagttg tctccaccac aacaagcaat gcacatggaa
      121 atccgttggt tccggaatcg ctattcagag ctggtatacc tgtataggaa tggtaaagac
      181 ctgttgggag aaactattta caactttgtt gaaaggactg aactcctgaa agatgatatt
      241 ggaaaaggga aagtaattct taggatcttt aaagtgactg ctgatgatgg tggatactac
      301 cactgtttct tcaaggatga caagttctat gaagagcata ttatagaagt caaggtcaca
      361 gccacaagct cagacatacg gattcttatg catccccata ataccgaagg tgtgatgttg
      421 gaatgtcact caagaggttg gttcccaaag cctcacatgg aatggagaga cagcaaaggg
      481 aatttcattc cagccacatc agaatcccat tcacaggatg aaaacaaatt gttcaacatg
      541 acaatgaacc ttttgattaa agtcagttcc acctggaatg tcacctgcta ccttcaaaac
      601 cttctaactc accaagaaga aagtataagt attgtcctac caggtgaact attttcatgg
      661 aaatctgttt ggataatgct tgctttgctg attttcatcc acgtgattta ctcatacact
      721 tgttggaatc agcaacattt gctcgtaggt tcctgtgtcc agagaaaacc tccttggaaa
      781 aagagtgcga tagacatcat aatttcattg atcgcaatta caggagtcat gcttattttg
      841 catcttaaac aaagagtccc agattcagac caatatgttg aattggacac tttgtgtttg
      901 gaagatatta gtgtgatcct gtgtgtgctg atagtattca acatcaagct catgtcactg
      961 atttacttca gaatgtatgg taaatatgat gggaattgta gctacttagg agatctggtt
     1021 catatgacta aggctcaaat gtctataatg ttacctctca agtccttttg tcttagtaaa
     1081 cttaacaaaa tccatataaa taactgtgtt gtataaatgg taatagattg tatcctattt
     1141 ttgtggttac ctcgggattt tcatttcact aataagagtg tttgtgccac tcaattaaat
     1201 gactgtccta gctcttactc tacagttatg ataacactcc caggtacaga ttgaaaggta
     1261 gtaatttcaa tcagtacatc cctaaaagcc tctgtatatt gcgattttct caagaaatga
     1321 atgaatttaa aactttattc ctgagagttt ggactaaaat tttaaatggt ataaacattc
     1381 atttaatttt aagaaaattc tctttctaaa tgactctaag ggccagacta gtaacactga
     1441 taaacttgtg ttttgaaggc tatctgaaat attctctaac tcatgtaaaa ctgaaaaccc
     1501 catatttact gggcaaaata attttccatg tggccagggg tgagagtgta gaactgatat
     1561 actgtgaaga aaaattccat aataaactta tcaataacat atggtctgaa atttttcatg
     1621 agaaatgtac acacatgtta ctggagtaat ggttcagaag tcaagagcta cttgctactc
     1681 tttttaagtt atatgt
//
