LOCUS       NM_001409238            2688 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 709 like (Znf709l), mRNA.
ACCESSION   NM_001409238 XM_039082258
VERSION     NM_001409238.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Jul 12, 2022 this sequence version replaced XM_039082258.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.21385.1,
                                           SRR26643292.32814.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-115               JAXUCZ010000008.1  28986472-28986586
            116-242             JAXUCZ010000008.1  28991445-28991571
            243-303             JAXUCZ010000008.1  28991756-28991816
            304-2688            JAXUCZ010000008.1  28993877-28996261
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..2688
                     /gene="Znf709l"
                     /note="zinc finger protein 709 like"
                     /db_xref="GeneID:100911320"
                     /db_xref="RGD:6493372"
     exon            1..115
                     /gene="Znf709l"
                     /inference="alignment:Splign:2.1.0"
     CDS             113..2032
                     /gene="Znf709l"
                     /note="zinc finger protein 627; zinc finger protein 317"
                     /codon_start=1
                     /product="zinc finger protein 709-like"
                     /protein_id="NP_001396167.1"
                     /db_xref="GeneID:100911320"
                     /db_xref="RGD:6493372"
                     /translation="MDSVTFEDVTVNFSRDEWALLDTSQRELYRDVMLEIFTNLASVG
                     GNWENQSTGDQCKTQERDISAHIEQRPREWESSPREIVTQVPVLKQKNVLPGVKPYEC
                     RVCGKVYSCLSSLKRHTQCHSKHAWCGSHIFGGTSYQCKDCGKTFIFQSSFRIHERTH
                     TGEKPYKCKQCGKAFSWPSSFQIHKRTHTGEKPYTCKECGKAFIYHTTYRGHMRTHTG
                     EKPYKCRECGKTFSHPSSFRNHERTHSGEKPYECRWCGKTFRYYQTFQIHERTHTGEK
                     PYQCKQCGKALSCLTSFRSHERIHTGEKPYKCRKCGKAFSFPSSFRKHEKIHTGEKPY
                     DCKECGKAFISLPNFRRHMIMHTGNGPYKCKECGKAFDCPSSFQIHKRTHTGEKPYEC
                     KQCGKAFSCSSSFRMHERTHTGEKPHECKQCGKAFSCSSSVRIHERTHTGEKPYECKQ
                     CGKAFSCSSSFRIHERIHTGEKPYECKQCGKAFSFSSSFRMHQRTHTGEKPYECKQCG
                     KAFSCSSSIRIHERTHTGEKPYECKQCGKAFSCPSSIRIHERTHTGEKPYECKQCNKT
                     FSCSSSARMHERTHTGEKPYECQQCHKAFSCARSFQIHERTHTGEKPYECQQCGKAFR
                     CSRSFRVHGRTHNGQ"
     exon            116..242
                     /gene="Znf709l"
                     /inference="alignment:Splign:2.1.0"
     exon            243..303
                     /gene="Znf709l"
                     /inference="alignment:Splign:2.1.0"
     exon            304..2688
                     /gene="Znf709l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgggagagac ggaggccgtg ggcgcggaga aggccgctct cctgactcta tttcagtcaa
       61 gttcatacgg ggtctcagtc acggaggcgg gagcttggga gggcgccggg aaatggactc
      121 agtgactttc gaggatgtaa ctgtgaactt cagccgtgat gagtgggctc tgctggacac
      181 ttctcagagg gaactgtacc gagatgtgat gctcgaaatc ttcactaact tggcttctgt
      241 tgggggaaat tgggaaaacc agagcactgg ggatcagtgt aaaacccagg aaagagacat
      301 aagcgctcac atagaacaga gaccacgtga atgggaaagt tcacccaggg aaatcgtcac
      361 ccaggttcca gttcttaaac agaagaatgt tctccccgga gtaaaaccct acgaatgcag
      421 agtatgcggg aaagtttact catgtttgtc ctctcttaaa aggcacactc agtgtcatag
      481 caagcatgca tggtgtggga gtcacatatt cggaggaaca tcataccagt gtaaggactg
      541 tgggaaaaca ttcatttttc aaagttcatt tcgaatacac gagaggaccc acactggaga
      601 gaaaccctat aaatgtaagc agtgtggtaa ggctttcagc tggcccagtt cctttcagat
      661 acacaagagg actcacacag gagagaagcc ctacacgtgt aaggaatgtg gcaaagcttt
      721 catttatcac actacctacc gaggacacat gaggacccac actggagaga aaccctataa
      781 atgtagggag tgtgggaaga ccttcagcca ccccagctcg tttcgaaacc atgaacgaac
      841 tcactccgga gagaaaccat atgagtgtag atggtgtgga aaaaccttca gatattacca
      901 aacctttcag atacatgaaa ggacccacac tggggaaaag ccttatcagt gtaagcagtg
      961 tgggaaagct ctcagttgcc tcacgtcttt ccgaagtcac gagaggattc acactggaga
     1021 aaaaccatat aaatgtagaa aatgtggcaa agcctttagt ttccccagct cctttcgcaa
     1081 acatgaaaaa attcacactg gagagaagcc ttatgattgt aaggagtgtg ggaaagcctt
     1141 catttctctg ccaaacttcc ggaggcacat gataatgcat actggaaatg ggccttacaa
     1201 gtgtaaggag tgtgggaaag ccttcgattg ccccagctcc tttcaaattc acaagcgaac
     1261 acacacggga gagaagccct atgagtgtaa acagtgtggt aaggccttca gctgctccag
     1321 ctcctttcgc atgcatgaga ggacccacac aggagagaag ccccatgaat gtaagcagtg
     1381 tggtaaggcc ttcagctgtt ccagttctgt tagaattcat gaaaggactc atacaggaga
     1441 gaaaccctat gagtgtaagc agtgtggtaa ggcttttagc tgttctagtt cctttcgaat
     1501 acatgaacga attcataccg gagagaaacc ctatgaatgt aagcagtgtg gtaaggcctt
     1561 cagcttttcc agttcttttc gcatgcatca gaggactcat actggagaga agccctatga
     1621 gtgtaaacag tgcggtaagg ccttcagctg ttccagctcc attcggattc atgaaagaac
     1681 acacactgga gagaaaccgt atgaatgtaa gcagtgcggt aaggccttca gttgccccag
     1741 ctccattcgg atacacgaaa gaacacacac tggagagaaa ccgtatgagt gtaagcagtg
     1801 caataagacc ttcagctgct ccagttctgc ccgaatgcat gaaaggactc acacgggaga
     1861 gaaaccctat gagtgtcaac aatgccacaa ggccttcagt tgtgctcgat cttttcagat
     1921 ccatgaaaga actcacactg gagagaaacc ctatgaatgt cagcagtgtg ggaaggcctt
     1981 cagatgttct cgctccttta gagtacatgg aagaactcat aatggacaat gatcttttaa
     2041 atgaaaatca tgtgttaaaa cctcccatta ttccactgcc ctttgaagat atgaaaatat
     2101 ttttgcttag agaaacactg taacaaagta taactggaaa accatttctc tagttgtgaa
     2161 tcctagaaaa aaccctgtga ctcttatgtg atggggaagc cttcagtggc tatgcaactt
     2221 aatgaggcca caaagataca taagggaaaa ataaaccttg tatgttaagt aatgtgtaaa
     2281 agctctcagt ttgctcagtt acctggaaat cacaaacttg cattacacag tagcttgatg
     2341 aagcaagctt gggaaaccat cagtagtctg tgtcctggaa agcacatgaa aagattcact
     2401 gcataggacc cttaagtgaa aaataatgat tagtttccca tcttagtgaa tgatcacatg
     2461 atactcattt gagaacttgt gagctcatga agacacccat tgtaaaggaa tcctataagt
     2521 gtagataata ttgggacatt cccatgtaag tttgtaataa aatttaagaa atgtaaaatt
     2581 gaaagaaact gtgactctgg actatagatt tctgttacct ttgcttatgt gaacagtgag
     2641 gttagattat tctgaaaatc atcattaaac aatagtacaa aagttaaa
//
