LOCUS       XM_039101159            1956 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CCA tRNA nucleotidyltransferase 1,
            mitochondrial-like (LOC100911093), transcript variant X2, mRNA.
ACCESSION   XM_039101159
VERSION     XM_039101159.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101159.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1956
                     /gene="LOC100911093"
                     /note="CCA tRNA nucleotidyltransferase 1,
                     mitochondrial-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 96 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100911093"
                     /db_xref="RGD:6494996"
     CDS             110..1414
                     /gene="LOC100911093"
                     /codon_start=1
                     /product="CCA tRNA nucleotidyltransferase 1,
                     mitochondrial-like"
                     /protein_id="XP_038957087.1"
                     /db_xref="GeneID:100911093"
                     /db_xref="RGD:6494996"
                     /translation="MQSLLYPWHRQVLSCSWSRLCLLKRYLFTMKLQSPEFQSLFTEG
                     LKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTEMKEMFQAAGIRMIN
                     NKGEKHGTIIARLHEENFEVTTLRIDVSTDGRHAEVEFTTDWQKDAERRDLTINSMFL
                     GFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDRE
                     TLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLDVASHIGLPANANLE
                     EFNKVSKNVEGFSPKPMTVLASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLI
                     KATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEHALLKEMQQWSVPPFPVSGHD
                     IRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLNYIKKT"
ORIGIN      
        1 cggccgggac agcggacggg taagcctgtc ctcagaatag gaacgccacg tttctaaggc
       61 accttgcgac cccgctgtgc agcatgtgtg gttggtgact tgtctcccga tgcagagcct
      121 cttgtaccct tggcacaggc aggtcctgag ctgtagttgg agtagattgt gccttctaaa
      181 gcgataccta tttacaatga agttgcagtc tccagaattc cagtcacttt tcacagaagg
      241 attgaagagc ctgacagaat tatttgccaa agagaatcat gaattaagaa tagcaggagg
      301 ggcggtgaga gatttactaa atggggtgaa gcctcaggat gtggatttcg ccaccactgc
      361 cacccctact gagatgaagg agatgttcca ggcggctggc attcgcatga taaacaacaa
      421 aggcgagaag catgggacca tcattgccag gcttcatgaa gaaaattttg aggttactac
      481 actccggatt gatgttagca ctgacggaag acatgcggag gtagagttca caactgactg
      541 gcagaaggat gccgaacgaa gagacctcac tataaactcc atgtttctag gttttgatgg
      601 tacactgttt gattacttta atggttatgc agatttaaag aataaaaagg ttcgatttgt
      661 tggacatgct aagcagagaa ttcaggaaga ttatcttcga attttaaggt atttcagatt
      721 ttatggcaga attgtcgaca aacctggtga ccatgaccgt gagactctag aagcaattgc
      781 agaaaatgcc aaaggcttgg ctggaatatc aggagagagg atttgggtag aactgaagaa
      841 aattcttact ggtgaccatg taaaccattt gatccacctg atctatgatc ttgatgtggc
      901 ttctcacata ggtttacctg ctaatgcaaa tttagaagaa tttaacaaag tcagtaaaaa
      961 tgttgaaggc ttttcaccga aaccaatgac tgttttggcc tctttattca aagtacaaga
     1021 tgatgtcaca aaactggatt tgagattgaa aatttcaaaa gaggagaaaa acctgggttt
     1081 atttatagtt aaaaacagga aagatttgat taaagcaaca gatagttcag aaccattgaa
     1141 accatatcaa gactttgtta tagattctag ggaaccggat gcaactgccc gtgtttgtga
     1201 gctgctgaag taccaaggag agcatgctct tctcaaggag atgcagcagt ggtctgtgcc
     1261 gccattccct gtgagtggac acgacatcag gaaagtgggc atttcttcag ggaaggaaat
     1321 tggggccctg ttacagcagt tgcgtgaaca gtggaagaaa agtggttacc aaatggaaaa
     1381 agatgaacta ctaaattaca taaagaagac ataaaaaacg agctctgtat gaaacagtgg
     1441 gaagtcttga cgcttcgttt aacactaaat gaagagtcaa caaaaaaagt aaacagccat
     1501 attacccggg aaaccagctg tgcactgtag aaggccggcc tatcagattc aggttggaag
     1561 ctttatacac agtcagtgtc tcatgtacat atccatgggg attcacatat gctgccattg
     1621 gaccacataa ggataagcta caaacaaaga aacaatgtgg agaataagac aaaagaaaaa
     1681 tagtaattcc agatttttac ttatttggga tataagttat actttttaac ctttgaattt
     1741 taggtattat acagtacttt gtgcaaaatg taagaccagt acaggaggtt ggcagatatt
     1801 ctgttggctt gcaaatgttc tttgatgatt caaagggaaa tattctagtg tttataaagc
     1861 ctagtgaggt cacgttttta tctttggaca attagctact ttccccagat gtcagtttcc
     1921 ttaactaagt gttatgttta acagcattgg cacaag
//
